Factsheet for Bra013378.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 3
peroxisome 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002106.1-P
Bra002793.1-P
Bra006420.1-P
Bra006857.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	Bra002106.1-P	AT5G17790.1	15340011
AT4G19170.1	Bra006420.1-P	AT5G17790.1	15340011
AT4G19170.1	Bra002793.1-P	AT5G56760.1	21798944
AT4G19170.1	Bra006857.1-P	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78923	Canola	plastid	99.8	84.4
Bra020970.1-P	Field mustard	plastid	86.11	76.54
AT4G19170.1	Thale cress	plastid	90.08	76.3
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	31.55	66.25
KRH76475	Soybean	plastid	74.6	63.73
VIT_02s0087g00910.t01	Wine grape	plastid	72.82	61.27
PGSC0003DMT400004981	Potato	plastid	71.83	61.25
Solyc08g075490.2.1	Tomato	plastid	72.02	61.11
Solyc08g075480.2.1	Tomato	plastid	66.87	58.41
Os02t0704000-01	Rice	plastid	66.87	52.82
TraesCS6A01G271600.1	Wheat	plastid	66.47	52.43
TraesCS6D01G251800.1	Wheat	plastid	66.27	52.27
TraesCS6B01G298800.1	Wheat	plastid	66.47	52.1
HORVU6Hr1G068720.1	Barley	plastid	66.47	52.1
KXG30924	Sorghum	plastid	65.67	51.96
Zm00001d051556_P001	Maize	plastid	65.28	51.57
PGSC0003DMT400004975	Potato	plastid	34.92	51.46
Zm00001d017766_P001	Maize	plastid	64.88	51.17
Os12t0435200-01	Rice	plastid	55.75	48.78
GSMUA_Achr4P19020_001	Banana	plastid	43.85	42.02
Bra001552.1-P	Field mustard	cytosol	32.74	41.67
Bra012603.1-P	Field mustard	cytosol	33.33	38.01
Bra032359.1-P	Field mustard	plastid	39.88	34.18
Bra040449.1-P	Field mustard	cytosol	36.71	33.82
Bra021558.1-P	Field mustard	plastid	39.68	33.44
Bra015002.1-P	Field mustard	plastid	38.69	33.33
Bra013298.1-P	Field mustard	plastid	37.5	32.53
Bra027336.1-P	Field mustard	plastid	38.49	32.5
Bra008358.1-P	Field mustard	plastid	36.31	31.18
Bra035033.1-P	Field mustard	plastid	37.1	31.06
Bra007826.1-P	Field mustard	plastid	36.71	30.88
Bra007825.1-P	Field mustard	plastid	32.74	28.7

Protein Annotations

EnsemblPlants:Bra013378.1	EnsemblPlants:Bra013378.1-P	EnsemblPlantsGene:Bra013378	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF46	PFAM:PF03055	SEG:seg	UniParc:UPI0002546459	UniProt:M4DA68
MapMan:9.1.6.3.2	:	:	:	:	:

Description

AT4G19170 (E=2e-256) NCED4 | NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4)

Coordinates

chrA01:+:5285534..5287048

Molecular Weight (calculated)

55755.7 Da

IEP (calculated)

5.622

GRAVY (calculated)

-0.174

Length

504 amino acids

Sequence
(BLAST)

001: MEEVINTFID PPSRPSVDPK HVLSDNFAPV LDELPPTECQ IIHGSLPPSL NGAYIRNGPN PQFLPRGPYH LFDGDGMLHA IRIRDGKATL CSRYVKTYKY
101: NVEKQTGTPV IPNVFSGFNG VPASMARGAL TAFRVLAGQF NPINGIGLAN TSLAFFCNRL FALGESDLPY AVRLTESGDI VTIGRHDFDG KLAMSMTAHP
201: KTDPETGETF AFRYGPVPPF LTFFRFDSTG NKRKDVPVFS MTSPSFLHDF AITSRYAIFS EIQIRMRMDS MLEGGSPVGA DNGKTPRLGV IPRYAEDESE
301: MKWFEVPGFN IIHAINAWDE DDGDTIVLIA PNIMSIEHTL ERMELVHALV EKVKIDLVTG IVTRHPISAR NLDFAVINPA FVGRRSRYVY AAIGDPMPKI
401: SGVVKLDVTR GDRDDCTVAR RMYGPGCYGG EPFFVARDPG DPEAEEDDGY VVTYVHDEVA GESKFLVMDA KSPELEVVAA VRLPRRVPYG FHGLFVKESD
501: LNKL

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.