Factsheet for Bra021558.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39117	Canola	mitochondrion	90.97	98.37
CDY33218	Canola	plastid	97.83	97.83
Bra001552.1-P	Field mustard	cytosol	62.54	94.44
Bra027336.1-P	Field mustard	plastid	92.64	92.8
AT3G14440.1	Thale cress	plastid	91.3	91.15
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	66.05	78.06
Bra012603.1-P	Field mustard	cytosol	53.34	72.17
Zm00001d008638_P001	Maize	cytosol	9.7	70.73
VIT_19s0093g00550.t01	Wine grape	plastid	71.74	70.44
Zm00001d027690_P001	Maize	cytosol	9.03	70.13
Os12t0617400-01	Rice	cytosol	32.94	69.61
Solyc07g056570.1.1	Tomato	plastid	70.4	69.59
Zm00001d023690_P001	Maize	cytosol	15.22	69.47
Bra035033.1-P	Field mustard	plastid	67.73	67.28
Bra008358.1-P	Field mustard	plastid	65.72	66.95
Bra032359.1-P	Field mustard	plastid	65.72	66.84
Bra013298.1-P	Field mustard	plastid	63.71	65.58
GSMUA_Achr4P22870_001	Banana	plastid	65.22	64.89
GSMUA_Achr6P31180_001	Banana	plastid	65.38	64.84
GSMUA_Achr7P01250_001	Banana	plastid	64.05	63.52
GSMUA_Achr2P12950_001	Banana	plastid	62.54	63.5
KRH43866	Soybean	plastid	48.66	63.4
GSMUA_Achr5P02570_001	Banana	plastid	64.55	63.28
TraesCS5B01G375900.1	Wheat	plastid	62.88	63.19
TraesCS5D01G383500.1	Wheat	plastid	62.88	63.19
Zm00001d031086_P001	Maize	plastid	60.03	63.09
TraesCS5A01G374000.1	Wheat	plastid	62.21	62.94
Os03t0645900-00	Rice	plastid	63.88	62.83
Zm00001d033222_P001	Maize	extracellular	63.38	62.75
HORVU5Hr1G008050.1	Barley	plastid	63.55	62.6
TraesCS5B01G029300.1	Wheat	plastid	64.21	62.54
GSMUA_Achr4P31460_001	Banana	plastid	63.04	62.52
TraesCS5D01G038800.1	Wheat	plastid	64.21	62.44
EER93751	Sorghum	plastid	63.38	62.03
OQU88453	Sorghum	plastid	59.2	61.78
Zm00001d018819_P001	Maize	plastid	59.03	61.61
Zm00001d013689_P001	Maize	plastid	61.87	61.56
Zm00001d007876_P001	Maize	plastid	58.53	60.87
Os07t0154100-01	Rice	plastid	58.53	60.14
Zm00001d041319_P001	Maize	plastid	60.7	60.1
HORVU5Hr1G054970.1	Barley	cytosol	61.04	60.03
TraesCS2D01G251600.1	Wheat	plastid	58.19	59.79
HORVU5Hr1G044510.1	Barley	cytosol	59.03	58.83
TraesCS2B01G268400.1	Wheat	plastid	58.53	58.72
HORVU5Hr1G092850.2	Barley	plastid	63.21	58.7
Zm00001d000095_P001	Maize	cytosol	16.05	58.54
TraesCS2A01G250600.1	Wheat	plastid	57.53	58.01
Zm00001d000157_P001	Maize	cytosol	9.7	55.24
Bra015002.1-P	Field mustard	plastid	53.01	54.19
Zm00001d023458_P001	Maize	cytosol	11.87	50.35
KRH13600	Soybean	plastid	48.16	50.09
Zm00001d042076_P001	Maize	cytosol, plastid	33.95	48.33
Zm00001d022623_P001	Maize	cytosol	27.59	44.24
Bra013378.1-P	Field mustard	peroxisome	33.44	39.68
Zm00001d035724_P001	Maize	plastid	40.64	38.27
Zm00001d019813_P001	Maize	plastid	11.87	37.57
Bra020970.1-P	Field mustard	plastid	33.61	35.45
Bra040449.1-P	Field mustard	cytosol	30.77	33.64
Zm00001d009286_P001	Maize	plastid	13.21	31.35
Bra007826.1-P	Field mustard	plastid	30.94	30.88
Zm00001d033377_P001	Maize	plastid	13.55	28.52
Bra007825.1-P	Field mustard	plastid	27.26	28.35
Zm00001d027592_P001	Maize	mitochondrion	18.73	26.29

Protein Annotations

EnsemblPlants:Bra021558.1	EnsemblPlants:Bra021558.1-P	EnsemblPlantsGene:Bra021558	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	PFAM:PF03055	SEG:seg	UniParc:UPI000254436E	UniProt:M4DYG2
MapMan:11.1.1.4	:	:	:	:	:

Description

AT3G14440 (E=6e-303) NCED3, ATNCED3, STO1, SIS7 | NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3); 9-cis-epoxycarotenoid dioxygenase

Coordinates

chrA01:+:24521951..24523747

Molecular Weight (calculated)

65816.0 Da

IEP (calculated)

5.843

GRAVY (calculated)

-0.286

Length

598 amino acids

Sequence
(BLAST)

001: MASFTANTAV SRRWLGGNHT QPSLSSSQTS DLSYSCSLPM TSRVQRKLNV SSALHTPPAL LFPKQSSTSP AIVVNPKAKD SDTKQMNLFQ RAAAAALDAA
101: EGFLVSHERQ HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGTIPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEDGSASYA CRFTQTNRFI
201: QERQLGKPVF PKAIGELHGH TGIARLMLFY ARAAAGLVDP GHGTGVANAG LVYFNNRLLA MSEDDLPYQV RITPSGDLKT VGRYDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEINLE QPTMMHDFAI TENFVVIPDQ QVVFKLPEMI RGGSPVVYDK EKVARFGVLD KYAGDSSAIK
401: WIEAPGCFCF HLWNAWEEPE TEEVVVIGSR MTPPDSIFNE SDENLKSVLS EIRLNLRTGE STRRPIISDG EEQVNLEAGM VNRNMLGRKT RYAYLALAEP
501: WPKVSGFAKV DLFTGEVEKH LYGDDRYGGE PLFLPGEGGG EDDGYILCFV HDEMTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ASDLAKQV

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.