Factsheet for Os12t0617400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0815700-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	Os01t0815700-01	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98456	Canola	cytosol	62.19	69.02
Os04t0131800-00	Rice	extracellular	33.22	54.34
Bra001552.1-P	Field mustard	cytosol	61.48	43.94
CDX82482	Canola	cytosol	61.48	43.94
CDY57471	Canola	cytosol	60.07	42.93
Bra012603.1-P	Field mustard	cytosol	64.66	41.4
Os03t0645900-00	Rice	plastid	86.57	40.3
Zm00001d031086_P001	Maize	plastid	80.21	39.89
HORVU5Hr1G008050.1	Barley	plastid	84.45	39.37
TraesCS5B01G029300.1	Wheat	plastid	85.16	39.25
TraesCS5D01G038800.1	Wheat	plastid	85.16	39.19
Zm00001d041319_P001	Maize	plastid	83.39	39.07
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	66.43	37.15
CDY39117	Canola	mitochondrion	69.26	35.44
GSMUA_Achr2P12950_001	Banana	plastid	69.26	33.28
GSMUA_Achr4P22870_001	Banana	plastid	70.32	33.11
Bra021558.1-P	Field mustard	plastid	69.61	32.94
GSMUA_Achr7P01250_001	Banana	plastid	69.96	32.84
GSMUA_Achr6P31180_001	Banana	plastid	69.61	32.67
CDY33218	Canola	plastid	68.9	32.61
GSMUA_Achr5P02570_001	Banana	plastid	69.96	32.46
Bra027336.1-P	Field mustard	plastid	68.2	32.33
Os07t0154100-01	Rice	plastid	66.43	32.3
AT3G14440.1	Thale cress	plastid	68.2	32.22
GSMUA_Achr4P31460_001	Banana	plastid	68.2	32.01
CDX98455	Canola	plastid	67.14	31.83
CDX97576	Canola	plastid	67.14	31.83
Bra032359.1-P	Field mustard	plastid	66.08	31.8
AT1G30100.1	Thale cress	plastid	66.08	31.75
CDY61838	Canola	plastid	65.72	31.58
CDY26294	Canola	plastid	65.72	31.58
Bra035033.1-P	Field mustard	plastid	67.14	31.56
CDY52448	Canola	plastid	67.14	31.56
PGSC0003DMT400039054	Potato	plastid	64.66	31.55
Solyc08g016720.1.1	Tomato	plastid	64.66	31.5
Bra013298.1-P	Field mustard	plastid	64.66	31.5
CDX88443	Canola	plastid	66.78	31.4
CDX99475	Canola	plastid	64.31	31.33
CDX78842	Canola	plastid	64.31	31.33
CDY55629	Canola	cytosol, plastid	64.31	31.22
VIT_19s0093g00550.t01	Wine grape	plastid	67.14	31.2
Solyc07g056570.1.1	Tomato	plastid	66.43	31.07
Bra008358.1-P	Field mustard	plastid	64.31	31.01
CDY01534	Canola	cytosol, plastid	63.6	30.87
VIT_10s0003g03750.t01	Wine grape	plastid	65.37	30.58
AT4G18350.1	Thale cress	cytosol, plastid	62.19	30.19
AT1G78390.1	Thale cress	cytosol, plastid	67.49	29.07
Os12t0640600-01	Rice	plasma membrane	36.4	19.07
Os02t0704000-01	Rice	plastid	41.7	18.5
Os12t0435200-01	Rice	plastid	36.4	17.88
Zm00001d035724_P001	Maize	plastid	37.46	16.69
Os06t0162550-00	Rice	mitochondrion, plastid	25.44	12.59
Os09t0321200-00	Rice	plastid	24.38	12.11
Os08t0371608-00	Rice	cytosol	22.26	11.6
Os08t0369800-01	Rice	plastid	4.24	3.14
KRH45171	Soybean	plastid	0.35	0.61
CDX98457	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Os12t0617400-01	EnsemblPlantsGene:Os12g0617400	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF26	PFAM:PF03055
SEG:seg	UniParc:UPI0000DD9F73	MapMan:50.1.12	:	:	:

Description

9-CIS-EPOXYCAROTENOID DIOXYGENASE 2Viviparous-14. (Os12t0617400-01)

Coordinates

chr12:+:26269318..26270792

Molecular Weight (calculated)

30889.5 Da

IEP (calculated)

4.386

GRAVY (calculated)

-0.076

Length

283 amino acids

Sequence
(BLAST)

001: FYFDADGTKS PDVEIELEQP TMIHDFAITE NFVVVPDHQV VFKLGEMFRG GSPVVLDREK TSRFGVLPKH ATSSLEMVWV DVPDCFCFHL WNAWEEAESG
101: EVVVVGSCMT PADSIFNESD EHLESVLTEI RLNTRTGEST RRAVLPPAAQ VNLEVGMVNR AMLGRKTRYA YLAVAEPWPK VSGFAKVDLA TGELTKFEYG
201: EGRFGGEPCF VPMGGAGAAA SPARGEDDGY ILSFVRDEAA GTSELLVVNA ADMRLEATVQ LPSRVPYGFH GTFINAGELA TQA

Best Arabidopsis Sequence Match ( AT1G78390.1 )
(BLAST)

001: MTIITIISGM YIYSLLSQDA HHSQYGQNTN LVLKKPIPKP QTAAFNQEST MASTTLLPST STQFLDRTFS TSSSSSRPKL QSLSFSSTLR NKKLVVPCYV
101: SSSVNKKSSV SSSLQSPTFK PPSWKKLCND VTNLIPKTTN QNPKLNPVQR TAAMVLDAVE NAMISHERRR HPHPKTADPA VQIAGNFFPV PEKPVVHNLP
201: VTGTVPECIQ GVYVRNGANP LHKPVSGHHL FDGDGMVHAV RFDNGSVSYA CRFTETNRLV QERECGRPVF PKAIGELHGH LGIAKLMLFN TRGLFGLVDP
301: TGGLGVANAG LVYFNGHLLA MSEDDLPYHV KVTQTGDLET SGRYDFDGQL KSTMIAHPKI DPETRELFAL SYDVVSKPYL KYFRFTSDGE KSPDVEIPLD
401: QPTMIHDFAI TENFVVIPDQ QVVFRLPEMI RGGSPVVYDE KKKSRFGILN KNAKDASSIQ WIEVPDCFCF HLWNSWEEPE TDEVVVIGSC MTPPDSIFNE
501: HDETLQSVLS EIRLNLKTGE STRRPVISEQ VNLEAGMVNR NLLGRKTRYA YLALTEPWPK VSGFAKVDLS TGEIRKYIYG EGKYGGEPLF LPSGDGEEDG
601: GYIMVFVHDE EKVKSELQLI NAVNMKLEAT VTLPSRVPYG FHGTFISKED LSKQALC

Arabidopsis Description

NCED99-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.