Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G004300.1 | Wheat | mitochondrion | 57.85 | 37.52 |
| Os08t0371608-00 | Rice | cytosol | 52.09 | 36.65 |
| TraesCS4B01G300700.1 | Wheat | plastid | 55.76 | 35.26 |
| Os09t0321200-00 | Rice | plastid | 49.48 | 33.16 |
| Os06t0162550-00 | Rice | mitochondrion, plastid | 34.82 | 23.25 |
| Os12t0640600-01 | Rice | plasma membrane | 20.68 | 14.63 |
| Os07t0154100-01 | Rice | plastid | 21.73 | 14.26 |
| Os12t0435200-01 | Rice | plastid | 21.2 | 14.06 |
| Os02t0704000-01 | Rice | plastid | 21.99 | 13.17 |
| Os03t0645900-00 | Rice | plastid | 20.94 | 13.16 |
| Os12t0617400-01 | Rice | cytosol | 3.14 | 4.24 |
| Os04t0131800-00 | Rice | extracellular | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os08t0369800-01 | EnsemblPlantsGene:Os08g0369800 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016702 | GO:GO:0046872 | GO:GO:0051213 | GO:GO:0055114 | InterPro:Carotenoid_Oase |
| PANTHER:PTHR10543 | PANTHER:PTHR10543:SF83 | PFAM:PF03055 | ProteinID:BAT05164.1 | SEG:seg | UniParc:UPI0003938CA2 |
| UniProt:A0A0P0XFB0 | MapMan:35.1 | : | : | : | : |
Description
carotenoid cleavage dioxygenase 8dHypothetical conserved gene. (Os08t0369800-01)
Coordinates
chr8:-:17228974..17235520
Molecular Weight (calculated)
42809.5 Da
IEP (calculated)
8.216
GRAVY (calculated)
-0.183
Length
382 amino acids
Sequence
(BLAST)
(BLAST)
001: HTGRPKTVPS MYTLQPRVCI SSSRSSISPK AARLSHQKAS TGKPYFREIQ VHLSSKLGEA SNAMNSTYQQ LLDSFVDHTF TFKCQPLRPT ESNFAPVDEI
101: GEITRVIEIE GEIPADFPEG VYIRNGGNPL YGGLQSVSSI FGQSHNIWVE GEGMLHAVYF CKSNNSTWSI SYNNRYVQSE TFRIEKERQK PCFLPMTDGN
201: PPAMLIASVL NTVWCLLLLL HRISSVIFLG LSQTFWKCYM LTVEYVQLRF RKVMKSMSNT SVFEHAGRVY AASEDDVPHE VDLHNLSTLG SWHLGGEWKL
301: PFTAHPKVIP GSKEMVIFGI NAVQPFLTVG IISEDGEKLK QKVGLKLDRC TYCHEIGVTG TYNIIIDSPL TLNPTRMLRG AP
101: GEITRVIEIE GEIPADFPEG VYIRNGGNPL YGGLQSVSSI FGQSHNIWVE GEGMLHAVYF CKSNNSTWSI SYNNRYVQSE TFRIEKERQK PCFLPMTDGN
201: PPAMLIASVL NTVWCLLLLL HRISSVIFLG LSQTFWKCYM LTVEYVQLRF RKVMKSMSNT SVFEHAGRVY AASEDDVPHE VDLHNLSTLG SWHLGGEWKL
301: PFTAHPKVIP GSKEMVIFGI NAVQPFLTVG IISEDGEKLK QKVGLKLDRC TYCHEIGVTG TYNIIIDSPL TLNPTRMLRG AP
001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV
Arabidopsis Description
NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.