Factsheet for Os12t0435200-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0815700-01
Os05t0533500-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	Os01t0815700-01	AT5G17790.1	15340011
AT4G19170.1	Os05t0533500-01	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0704000-01	Rice	plastid	62.67	56.58
Bra013378.1-P	Field mustard	peroxisome	48.78	55.75
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	22.4	53.75
PGSC0003DMT400047548	Potato	cytosol	33.33	50.53
KRH76475	Soybean	plastid	50.87	49.66
PGSC0003DMT400004981	Potato	plastid	50.87	49.58
VIT_02s0087g00930.t01	Wine grape	plastid	50.69	49.58
Solyc08g075490.2.1	Tomato	plastid	50.87	49.33
VIT_02s0087g00910.t01	Wine grape	plastid	50.52	48.58
AT4G19170.1	Thale cress	plastid	50.0	48.4
CDX99397	Canola	plastid	49.48	48.06
Solyc08g075480.2.1	Tomato	plastid	48.09	48.01
CDX78923	Canola	plastid	49.65	47.99
Bra020970.1-P	Field mustard	plastid	46.7	47.44
CDX76489	Canola	plastid	43.75	47.37
PGSC0003DMT400047553	Potato	plastid	46.53	46.61
VIT_16s0039g01370.t01	Wine grape	plastid	43.4	44.8
PGSC0003DMT400004975	Potato	plastid	25.35	42.69
GSMUA_Achr4P19020_001	Banana	plastid	37.15	40.68
Os12t0617400-01	Rice	cytosol	17.88	36.4
Os12t0640600-01	Rice	plasma membrane	32.47	34.63
Os07t0154100-01	Rice	plastid	34.2	33.85
Os03t0645900-00	Rice	plastid	34.03	32.24
Os04t0131800-00	Rice	extracellular	9.38	31.21
Os06t0162550-00	Rice	mitochondrion, plastid	25.0	25.17
Os09t0321200-00	Rice	plastid	23.44	23.68
Os08t0371608-00	Rice	cytosol	20.66	21.92
Os08t0369800-01	Rice	plastid	14.06	21.2

Protein Annotations

EntrezGene:4352125	MapMan:9.1.6.3.2	ProteinID:ABA97976.1	EMBL:AY838898	ProteinID:BAF29705.1	ProteinID:BAT16965.1
InterPro:Carotenoid_Oase	ProteinID:EAZ20344.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009688	GO:GO:0009987	GO:GO:0016491
GO:GO:0016702	GO:GO:0045549	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	EnsemblPlantsGene:Os12g0435200
EnsemblPlants:Os12t0435200-01	PFAM:PF03055	PANTHER:PTHR10543	PANTHER:PTHR10543:SF46	UniProt:Q5MBR6	UniParc:UPI000049E250
RefSeq:XP_015619611.1	:	:	:	:	:

Description

9-CIS-EPOXYCAROTENOID DIOXYGENASE 2Similar to Zeaxanthin cleavage oxygenase. (Os12t0435200-01)

Coordinates

chr12:-:14232905..14234854

Molecular Weight (calculated)

63872.1 Da

IEP (calculated)

6.734

GRAVY (calculated)

-0.067

Length

576 amino acids

Sequence
(BLAST)

001: MEVPIAAMTF AHPANVMTLA SRQPKSKRSH ISPATTAHRN LQTRLAHHHH ATPASLPMAI CNTVDKVINR FIDLPEQRPT VDPRRVLSGN FAPVDELPPT
101: SCHVIRGSIP SCLAGGVYIR NGPNPQHRLP QRTHHLFDGD GMLHSLLIPS ASSTLLSEPV LCSRYVHTYK YLLERETGGP VLPNFFAGFH GVAGLARAVV
201: MIARVLAGQI NLNKGFGLAN TSITLFADCL YALCESDLPY SMHINPANGE VTTLGRCDFG GDLSFRMTAH PKKDPVTMEL FAFRYNVFQP FITYFWFDRA
301: GSKVADVPIL SLQKPSVMHD FAITERYAIF PESQLIVNPM DMVMRGSSLV GLDRTMVPRI GVLPRYAKDE SDMRWFEVPR FNMLHTTNGW EEADGEEIVL
401: VAPNILSIEH MLGNMELMRA RVDMVRINLC TGDVSCTALS PESLEFGVIH QGYVGRKNRY GYFGVSGPLP KIKGIRKLDF DLVGSGDCTV GRRDFGLGCF
501: AGEPFFVPDN IDGYGNEDSG YVVCYTHEED TGESWFVVMD AKSPELDIVA EVQLPSRIPY GFHGIFVKQA ELLAQQ

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.