CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94930
KRH06519
KRH47957
KRH64967

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	KRG94930	AT5G17790.1	15340011
AT4G19170.1	KRH64967	AT5G17790.1	15340011
AT4G19170.1	KRH06519	AT5G56760.1	21798944
AT4G19170.1	KRH47957	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013378.1-P	Field mustard	peroxisome	63.73	74.6
VIT_02s0087g00910.t01	Wine grape	plastid	66.78	65.78
CDX99397	Canola	plastid	65.08	64.76
AT4G19170.1	Thale cress	plastid	64.92	64.37
PGSC0003DMT400004981	Potato	plastid	64.24	64.13
CDX78923	Canola	plastid	64.75	64.09
Bra020970.1-P	Field mustard	plastid	61.02	63.49
CDX76489	Canola	plastid	57.12	63.35
Solyc08g075490.2.1	Tomato	plastid	63.73	63.3
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	25.25	62.08
Solyc08g075480.2.1	Tomato	plastid	59.15	60.49
PGSC0003DMT400004975	Potato	plastid	32.71	56.43
Os02t0704000-01	Rice	plastid	58.14	53.76
Zm00001d051556_P001	Maize	plastid	57.12	52.82
KXG30924	Sorghum	plastid	56.95	52.75
TraesCS6D01G251800.1	Wheat	plastid	56.95	52.58
TraesCS6A01G271600.1	Wheat	plastid	56.78	52.43
HORVU6Hr1G068720.1	Barley	plastid	57.12	52.41
Zm00001d017766_P001	Maize	plastid	56.44	52.11
TraesCS6B01G298800.1	Wheat	plastid	56.78	52.1
Os12t0435200-01	Rice	plastid	49.66	50.87
GSMUA_Achr4P19020_001	Banana	plastid	40.17	45.06
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	31.19	34.07
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	33.05	33.97
KRH58642	Soybean	plastid	32.71	32.82
KRH42549	Soybean	plastid	31.53	31.58
KRH43866	Soybean	plastid	23.9	30.72
KRH13600	Soybean	plastid	24.58	25.22
KRH62062	Soybean	cytosol, plastid	24.58	25.04
KRH52732	Soybean	plastid	24.24	24.61
KRH52736	Soybean	mitochondrion, plastid	24.41	24.53
KRH62063	Soybean	cytosol	18.64	22.77
KRH45171	Soybean	plastid	5.93	21.21

Protein Annotations

EntrezGene:100777875	MapMan:9.1.6.3.2	UniProt:A0A0R4J2L5	EMBL:ACUP02000615	InterPro:Carotenoid_Oase	EnsemblPlantsGene:GLYMA_01G154900
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0010287
GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	EnsemblPlants:KRH76475	ProteinID:KRH76475	ProteinID:KRH76475.1
PFAM:PF03055	PANTHER:PTHR10543	PANTHER:PTHR10543:SF46	UniParc:UPI000189D583	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:49241494..49244416

Molecular Weight (calculated)

64983.1 Da

IEP (calculated)

6.882

GRAVY (calculated)

-0.219

Length

590 amino acids

Sequence
(BLAST)

001: MVPKPILVTT PPPATSAPSP LLNAVSPLKT EEKPQTQTLK TPTTTTQKAI TKPSPSSSTT KTTPQQRVEL KRKTNSWVPA LMLNAFDDII NNFIDPPLKP
101: SIDPRHVLSQ NFAPVHELPP TECEVIEGSL PPSLDGAYIR NGPNPQFLPR GPYHLFDGDG MLHALRISHG KKPTLCSRYV KTYKYTMEND AGFPLIPNVF
201: SGFNSLVASA ARGSLSAARF LTGQFNPANG IGLANTSLAF FGNRLFALGE SDLPYVVNVT PDGDIETLGR HDFDGKLTFS MTAHPKIDPD TAECFAFRYG
301: PVPPFLTYFR FDGNGKKHED VPIFSMLTPS FLHDFAITKK YAIFCDIQLG LNPLDMISGG SPVGSVASKV PRIGILPRDA KDESMMKWFE VPGFNIIHAI
401: NAWEEDEGRT VVLVAPNILS MEHALERMEL VHAMVEKVRI ELDTGIITRQ PVSARNLDFA VINPAFVGKK NRFVYAAVGD PMPKISGVVK LDVSKGEERR
501: DCTVGCRMYG EGCYGGEPFF VAREEGGEED DGYLVSYVHD ERKGESRFLV MDAKSPELDV VAAVRLPRRV PYGFHGLFVK ESELRKVSLS

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.