CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52736	Soybean	mitochondrion, plastid	90.68	74.62
KRH52732	Soybean	plastid	63.56	52.84
KRH62062	Soybean	cytosol, plastid	62.11	51.81
VIT_11s0016g02740.t01	Wine grape	cytosol	19.88	51.34
Solyc08g066720.1.1	Tomato	cytosol	43.06	50.24
VIT_04s0008g03510.t01	Wine grape	cytosol	57.56	49.03
PGSC0003DMT400011006	Potato	cytosol	56.31	44.81
PGSC0003DMT400011015	Potato	plastid	53.83	42.41
VIT_04s0008g03480.t01	Wine grape	cytosol	59.63	41.44
KXG19379	Sorghum	mitochondrion, plastid	40.99	33.28
Os06t0162550-00	Rice	mitochondrion, plastid	39.34	33.22
VIT_04s0008g03450.t01	Wine grape	plastid	29.19	32.64
Zm00001d045232_P001	Maize	plastid	39.54	31.16
KRH58642	Soybean	plastid	25.88	21.26
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	25.26	21.25
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	23.4	20.93
KRH42549	Soybean	plastid	25.47	20.88
KRH76475	Soybean	plastid	22.77	18.64
KRH43866	Soybean	plastid	17.39	18.3
KRH45171	Soybean	plastid	5.38	15.76
KRH13600	Soybean	plastid	16.98	14.26

Protein Annotations

EMBL:ACUP02002216	EnsemblPlants:KRH62063	EnsemblPlantsGene:GLYMA_04G083600	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF30	PFAM:PF03055	ProteinID:KRH62063	ProteinID:KRH62063.1	UniParc:UPI0006ED7D2E
UniProt:A0A0R0KG82	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:7048192..7052947

Molecular Weight (calculated)

54792.0 Da

IEP (calculated)

6.378

GRAVY (calculated)

-0.173

Length

483 amino acids

Sequence
(BLAST)

001: MPQPLKKVLL EVPLQIDEVH KTMANTAAIL LDAFVDSFFE FLDQPLLPSQ SNFAPVVELG EAIVVTSIQG QIPDDFPEGV YIINDKSSCC ISYLWRSTHI
101: WVEGEGMLHA IYFKRSSQGI WTVEKQRSKP LFLPAIEGDS PAILSAYLLN WYISNTIVFE HSGKFYSVAE NHFPQEINIF TLKTLRNWNK APGTGELVTL
201: GVAATKPFAI IGIISAEGKK LVHKVDLNLN RCTLCHDIGV TPRYNVIMDF PLTIDLNRLL RRGPLIKYNK EEYARIGVMP RYGDANSIKW FEVEPNCTFH
301: MINSFEDGHE VVVRGCRSLD SLIPGPDPSL NEFEWLSRCH EWQLNMQTGE VKERGLCGAN IVYMDFPMMN GNFIGIRNRY AYNNQVVDPI ASSKQDVPKY
401: GGLAKLYFEE SCAKFSMQRN KEQPEEPIRV ECHMFEKNTF CSGAAFVPRD GKFSGETVAK ITMPRRVPYG FHGTFMPISF ETQ

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.