CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

cytosol 2
mitochondrion 4
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62063	Soybean	cytosol	74.62	90.68
VIT_11s0016g02740.t01	Wine grape	cytosol	21.98	68.98
KRH52732	Soybean	plastid	66.78	67.47
KRH62062	Soybean	cytosol, plastid	65.08	65.98
VIT_04s0008g03510.t01	Wine grape	cytosol	58.26	60.32
Solyc08g066720.1.1	Tomato	cytosol	42.25	59.9
PGSC0003DMT400011006	Potato	cytosol	58.6	56.67
PGSC0003DMT400011015	Potato	plastid	57.41	54.98
VIT_04s0008g03480.t01	Wine grape	cytosol	62.18	52.52
Os06t0162550-00	Rice	mitochondrion, plastid	42.42	43.53
KXG19379	Sorghum	mitochondrion, plastid	43.44	42.86
Zm00001d045232_P001	Maize	plastid	42.59	40.78
VIT_04s0008g03450.t01	Wine grape	plastid	28.62	38.89
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	27.43	28.05
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	25.72	27.96
KRH58642	Soybean	plastid	26.75	26.7
KRH42549	Soybean	plastid	26.24	26.15
KRH76475	Soybean	plastid	24.53	24.41
KRH43866	Soybean	plastid	18.57	23.75
KRH45171	Soybean	plastid	5.96	21.21
KRH13600	Soybean	plastid	17.89	18.26

Protein Annotations

EMBL:ACUP02003429	EnsemblPlants:KRH52736	EnsemblPlantsGene:GLYMA_06G085100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF30	PFAM:PF03055	ProteinID:KRH52736	ProteinID:KRH52736.1	UniParc:UPI0003DED0E5
UniProt:A0A0R0JE18	MapMan:50.1.12	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:6532147..6537162

Molecular Weight (calculated)

66602.9 Da

IEP (calculated)

6.944

GRAVY (calculated)

-0.243

Length

587 amino acids

Sequence
(BLAST)

001: MATLYKTFIV NCSIQKRPSH VSDNSRHYNL PLFPAFKPLK KVLPEVPLQI DDVKKTMSKT AAILLDAFVD SFFEFIDQPL LPSQSNFAPV VELGEAIVVT
101: SIQGQIPDDF PEGVYIRNGP NPLFGGLQST NSIFGRSSYI WVEGEGMLHA IYFKRWSPGI WTVLYNNKYV ETDTYKVEKQ RSKPLFLPAI EGDSPAILSA
201: YLLNWLRFGK VNKYISNTNV FEHSGKFYSV AENHIPQEID IFTLKTLRNW NVNGAWDRPF TSHPKKVPGT GELVTFGVAA TKPFAVVGII SADGKKLVHK
301: VDLKLNRCTL CHDIGVTQRY NVIMDFPLTI DLNRLLRGGP LMKYNKEEYA RIGVMPHYGD ANSIKWFEVE PNCTFHIINS FEDGHEVVVR GCRSLDSLIP
401: GPDPSLKEFE WLSRCHEWRL NMQTGEVKER GLCGANIVYM DFPMINGNFI GIRNRYAYTQ VVDPIASSTQ DVPKYGGLAK LYFEESCAKF SMQRNREQPE
501: EPIRVECHMF EKNTFCSGAA FVPRDGGLEE DDGWIIAFVH NEDTNISEVH IIDTKKFSGE TVAKITMPRR VPYGFHGAFM PISFETQ

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.