Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_11s0016g02740.t01 | Wine grape | cytosol | 26.09 | 57.75 |
| VIT_04s0008g03510.t01 | Wine grape | cytosol | 59.42 | 43.39 |
| KRH62063 | Soybean | cytosol | 50.24 | 43.06 |
| KRH52736 | Soybean | mitochondrion, plastid | 59.9 | 42.25 |
| KRH52732 | Soybean | plastid | 54.59 | 38.9 |
| KRH62062 | Soybean | cytosol, plastid | 53.38 | 38.17 |
| VIT_04s0008g03480.t01 | Wine grape | cytosol | 60.63 | 36.12 |
| Os06t0162550-00 | Rice | mitochondrion, plastid | 47.58 | 34.44 |
| KXG19379 | Sorghum | mitochondrion, plastid | 49.03 | 34.12 |
| Zm00001d045232_P001 | Maize | plastid | 48.31 | 32.63 |
| VIT_04s0008g03450.t01 | Wine grape | plastid | 27.78 | 26.62 |
| Solyc01g087250.2.1 | Tomato | cytosol, plastid | 28.02 | 21.28 |
| Solyc01g087260.2.1 | Tomato | plastid | 26.81 | 20.37 |
| Solyc08g075480.2.1 | Tomato | plastid | 25.85 | 18.54 |
| Solyc08g075490.2.1 | Tomato | plastid | 25.85 | 18.01 |
| Solyc08g016720.1.1 | Tomato | plastid | 24.4 | 17.38 |
| Solyc07g056570.1.1 | Tomato | plastid | 24.64 | 16.86 |
| Solyc05g053530.1.1 | Tomato | plastid | 22.46 | 15.95 |
Protein Annotations
| EnsemblPlants:Solyc08g066720.1.1 | EnsemblPlantsGene:Solyc08g066720.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016702 | GO:GO:0046872 | GO:GO:0055114 | InterPro:Carotenoid_Oase | PANTHER:PTHR10543 |
| PANTHER:PTHR10543:SF30 | PFAM:PF03055 | SEG:seg | UniParc:UPI000276BEA6 | UniProt:K4CLP8 | MapMan:35.1 |
Description
No Description!
Coordinates
chr8:+:55542658..55544616
Molecular Weight (calculated)
47601.1 Da
IEP (calculated)
6.380
GRAVY (calculated)
-0.300
Length
414 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIHRKKPGF LPAIEGDSPA ILMAYILNVL RFGVENKYLS NTNIFEHSKK YYSIAENHLP QEIDIYSLET LGNWNVNGAW NRPFTSHPKK APGASELVIM
101: GIYPRKPYFE IGVISADGKK MVHKVDLKFN RCSLCHDMGV TERYNVIMDF PLTIDINRLI RGDSLIKYDK DGYARIGVMP RYGDANSVRW FDVQPSCVFH
201: LINCFEDNDE VVVRGCRARE SVLPRPGSKD EKYKRFFEES EETSSTKINN ESLEESFFYR VCEWRLIMRT GEVKEKNVIT NFFMEFPMIN EKFIGLKNKF
301: CYLQVVDIEA SSISDGLVKY GGLAKFQFED DMELIKVEYH MLAEGNFCSG TTFVPKPQGV DEDDGWLVTF LHNENTNVSH VYIVDAKKFA THPITTITLP
401: SRVPYGFHGA FMPL
101: GIYPRKPYFE IGVISADGKK MVHKVDLKFN RCSLCHDMGV TERYNVIMDF PLTIDINRLI RGDSLIKYDK DGYARIGVMP RYGDANSVRW FDVQPSCVFH
201: LINCFEDNDE VVVRGCRARE SVLPRPGSKD EKYKRFFEES EETSSTKINN ESLEESFFYR VCEWRLIMRT GEVKEKNVIT NFFMEFPMIN EKFIGLKNKF
301: CYLQVVDIEA SSISDGLVKY GGLAKFQFED DMELIKVEYH MLAEGNFCSG TTFVPKPQGV DEDDGWLVTF LHNENTNVSH VYIVDAKKFA THPITTITLP
401: SRVPYGFHGA FMPL
001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI
Arabidopsis Description
CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.