Factsheet for Solyc08g075490.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g057780.2.1
Solyc12g008780.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	Solyc01g057780.2.1	AT5G17790.1	15340011
AT4G19170.1	Solyc12g008780.1.1	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004981	Potato	plastid	95.12	95.6
Solyc08g075480.2.1	Tomato	plastid	78.96	81.28
Bra013378.1-P	Field mustard	peroxisome	61.11	72.02
VIT_02s0087g00910.t01	Wine grape	plastid	70.2	69.62
CDX99397	Canola	plastid	65.15	65.26
CDX78923	Canola	plastid	65.15	64.93
AT4G19170.1	Thale cress	plastid	64.65	64.54
KRH76475	Soybean	plastid	63.3	63.73
CDX76489	Canola	plastid	56.57	63.16
Bra020970.1-P	Field mustard	plastid	60.1	62.96
TraesCS6A01G271600.1	Wheat	plastid	57.07	53.05
KXG30924	Sorghum	plastid	56.73	52.9
TraesCS6D01G251800.1	Wheat	plastid	56.73	52.74
TraesCS6B01G298800.1	Wheat	plastid	57.07	52.72
Zm00001d051556_P001	Maize	plastid	56.57	52.66
HORVU6Hr1G068720.1	Barley	plastid	56.9	52.57
Zm00001d017766_P001	Maize	plastid	55.89	51.96
Os02t0704000-01	Rice	plastid	54.88	51.1
Os12t0435200-01	Rice	plastid	49.33	50.87
GSMUA_Achr4P19020_001	Banana	plastid	39.23	44.3
Solyc01g087250.2.1	Tomato	cytosol, plastid	31.48	34.31
Solyc05g053530.1.1	Tomato	plastid	33.5	34.13
Solyc01g087260.2.1	Tomato	plastid	31.31	34.13
Solyc07g056570.1.1	Tomato	plastid	34.18	33.55
Solyc08g016720.1.1	Tomato	plastid	31.31	32.01
Solyc08g066720.1.1	Tomato	cytosol	18.01	25.85

Protein Annotations

EnsemblPlants:Solyc08g075490.2.1	EnsemblPlantsGene:Solyc08g075490.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543
PANTHER:PTHR10543:SF46	PFAM:PF03055	SEG:seg	UniParc:UPI000276B6EA	UniProt:K4CMR6	MapMan:9.1.6.3.2

Description

No Description!

Coordinates

chr8:-:59643898..59646517

Molecular Weight (calculated)

65462.1 Da

IEP (calculated)

6.993

GRAVY (calculated)

-0.254

Length

594 amino acids

Sequence
(BLAST)

001: MDALSSTFLS TLSQNPKSLL SPYNNNNNNY HYYSPTLKVF SVRIEERPQT TTTITKPQEK STPSPPKPSP KREPIPSRKP IEPSFPSFIF NAFDDFVNTF
101: IDPPRKSSVD PRYVLSNNFA PVDELPPTEC EVVEGSLPPC LDGAYIRNGP NPQYLPRGPY HLFDGDGMLH SIKISQGKAT LCSRFVKTYK YNIENEAGSP
201: IIPNVFSGFN GLTASAARGA LTAARAIAGQ FNPANGIGLA NTSLALFGGK LFALGESDLP YEVKIAPNGD IFTLGRHDFN GKLSMSMTAH PKIDHETNEA
301: FAFRYGPIPP FITYFRVNPD GTKTQDVPIF SMTRPSFLHD FAITKKYAIF SDIQIGMNPI DLLTGGSPVG TDSGKIPRIG VIPRYAKDES EMRWFDVSGF
401: NIVHAINAWD EDGGDTIVLI APNILSVEHT LERMDMIHAS VEKVKINLKT GMVSRHPIST RNLDFGVINP AYVGKKNKYV YAAIGGPMPK VIGIAKLDVS
501: VAEIDRRDCI VACRIFGKDC YGGEPFFVPK NPSIDEDDGY VVSYVHNEKT GESNFLVMDA TSPNLDIVAN VKLPRRVPYG FHGLFVSEND LMKL

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.