Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013378.1-P | Field mustard | peroxisome | 76.3 | 90.08 |
| CDX99397 | Canola | plastid | 87.9 | 88.2 |
| Bra020970.1-P | Field mustard | plastid | 83.19 | 87.3 |
| CDX78923 | Canola | plastid | 87.06 | 86.91 |
| CDX76489 | Canola | plastid | 77.48 | 86.65 |
| PGSC0003DMT400004978 | Potato | cytosol, mitochondrion, peroxisome | 26.89 | 66.67 |
| VIT_02s0087g00910.t01 | Wine grape | plastid | 66.72 | 66.28 |
| PGSC0003DMT400004981 | Potato | plastid | 64.71 | 65.14 |
| KRH76475 | Soybean | plastid | 64.37 | 64.92 |
| Solyc08g075490.2.1 | Tomato | plastid | 64.54 | 64.65 |
| Solyc08g075480.2.1 | Tomato | plastid | 59.83 | 61.7 |
| PGSC0003DMT400004975 | Potato | plastid | 32.94 | 57.31 |
| KXG30924 | Sorghum | plastid | 58.82 | 54.95 |
| Zm00001d051556_P001 | Maize | plastid | 58.49 | 54.55 |
| TraesCS6A01G271600.1 | Wheat | plastid | 58.49 | 54.46 |
| TraesCS6D01G251800.1 | Wheat | plastid | 58.32 | 54.3 |
| Os02t0704000-01 | Rice | plastid | 58.15 | 54.23 |
| HORVU6Hr1G068720.1 | Barley | plastid | 58.49 | 54.12 |
| TraesCS6B01G298800.1 | Wheat | plastid | 58.32 | 53.97 |
| Zm00001d017766_P001 | Maize | plastid | 57.82 | 53.83 |
| Os12t0435200-01 | Rice | plastid | 48.4 | 50.0 |
| GSMUA_Achr4P19020_001 | Banana | plastid | 40.5 | 45.82 |
| AT3G63520.1 | Thale cress | cytosol | 33.11 | 36.62 |
| AT1G30100.1 | Thale cress | plastid | 35.63 | 35.99 |
| AT3G24220.1 | Thale cress | plastid | 33.61 | 34.66 |
| AT3G14440.1 | Thale cress | plastid | 34.12 | 33.89 |
| AT4G18350.1 | Thale cress | cytosol, plastid | 32.44 | 33.1 |
| AT1G78390.1 | Thale cress | cytosol, plastid | 33.45 | 30.29 |
Protein Annotations
| EntrezGene:827655 | MapMan:9.1.6.3.2 | ProteinID:AEE84154.1 | EMBL:AK227175 | ArrayExpress:AT4G19170 | EnsemblPlantsGene:AT4G19170 |
| RefSeq:AT4G19170 | TAIR:AT4G19170 | RefSeq:AT4G19170-TAIR-G | EnsemblPlants:AT4G19170.1 | TAIR:AT4G19170.1 | EMBL:AY056789 |
| EMBL:AY136353 | Unigene:At.1927 | EMBL:BT008785 | ProteinID:CAA16706.1 | ProteinID:CAB78919.1 | InterPro:Carotenoid_Oase |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0010287 | GO:GO:0016491 | GO:GO:0016702 | GO:GO:0046872 | GO:GO:0051213 | GO:GO:0055114 |
| Symbol:NCED4 | RefSeq:NP_193652.1 | UniProt:O49675 | PFAM:PF03055 | PO:PO:0000013 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR10543 | PANTHER:PTHR10543:SF46 | UniParc:UPI0000037A31 | SEG:seg | : | : |
Description
CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
Coordinates
chr4:+:10481619..10483879
Molecular Weight (calculated)
65605.4 Da
IEP (calculated)
6.906
GRAVY (calculated)
-0.218
Length
595 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.