Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77467 | Canola | plastid | 83.88 | 82.73 |
| Bra015002.1-P | Field mustard | plastid | 83.88 | 82.73 |
| CDX85148 | Canola | cytosol | 83.36 | 82.22 |
| PGSC0003DMT400049305 | Potato | cytosol | 55.46 | 62.87 |
| VIT_05s0051g00670.t01 | Wine grape | plastid | 59.79 | 60.0 |
| Solyc05g053530.1.1 | Tomato | plastid | 59.45 | 58.83 |
| GSMUA_Achr8P12840_001 | Banana | plastid | 55.29 | 55.38 |
| AT3G14440.1 | Thale cress | plastid | 54.77 | 52.75 |
| GSMUA_Achr5P15630_001 | Banana | plastid | 54.07 | 52.44 |
| AT4G18350.1 | Thale cress | cytosol, plastid | 51.47 | 50.94 |
| AT1G30100.1 | Thale cress | plastid | 51.65 | 50.59 |
| TraesCS2A01G012300.1 | Wheat | mitochondrion, plastid | 46.45 | 47.27 |
| TraesCS2D01G013000.1 | Wheat | cytosol | 48.35 | 46.27 |
| Os04t0131800-00 | Rice | extracellular | 13.86 | 46.24 |
| AT1G78390.1 | Thale cress | cytosol, plastid | 52.51 | 46.12 |
| AT3G63520.1 | Thale cress | cytosol | 34.49 | 36.99 |
| AT4G19170.1 | Thale cress | plastid | 34.66 | 33.61 |
Protein Annotations
| MapMan:11.1.1.4 | EntrezGene:822008 | ProteinID:AEE76875.1 | ArrayExpress:AT3G24220 | EnsemblPlantsGene:AT3G24220 | RefSeq:AT3G24220 |
| TAIR:AT3G24220 | RefSeq:AT3G24220-TAIR-G | EnsemblPlants:AT3G24220.1 | TAIR:AT3G24220.1 | Unigene:At.37572 | ProteinID:BAB01363.1 |
| InterPro:Carotenoid_Oase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009579 | GO:GO:0009628 |
| GO:GO:0009639 | GO:GO:0009688 | GO:GO:0009987 | GO:GO:0010114 | GO:GO:0016020 | GO:GO:0016491 |
| GO:GO:0016702 | GO:GO:0045549 | GO:GO:0046872 | GO:GO:0051213 | GO:GO:0055114 | Symbol:NCED6 |
| RefSeq:NP_189064.1 | PFAM:PF03055 | PO:PO:0000201 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001041 |
| PO:PO:0009010 | PO:PO:0009046 | PO:PO:0009089 | PO:PO:0025281 | PO:PO:0025374 | PANTHER:PTHR10543 |
| PANTHER:PTHR10543:SF48 | UniProt:Q9LRM7 | UniParc:UPI000003BCE5 | : | : | : |
Description
NCED69-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM7]
Coordinates
chr3:+:8761419..8763303
Molecular Weight (calculated)
63824.7 Da
IEP (calculated)
6.286
GRAVY (calculated)
-0.237
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MQHSLRSDLL PTKTSPRSHL LPQPKNANIS RRILINPFKI PTLPDLTSPV PSPVKLKPTY PNLNLLQKLA ATMLDKIESS IVIPMEQNRP LPKPTDPAVQ
101: LSGNFAPVNE CPVQNGLEVV GQIPSCLKGV YIRNGANPMF PPLAGHHLFD GDGMIHAVSI GFDNQVSYSC RYTKTNRLVQ ETALGRSVFP KPIGELHGHS
201: GLARLALFTA RAGIGLVDGT RGMGVANAGV VFFNGRLLAM SEDDLPYQVK IDGQGDLETI GRFGFDDQID SSVIAHPKVD ATTGDLHTLS YNVLKKPHLR
301: YLKFNTCGKK TRDVEITLPE PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYVKE KMARFGVLSK QDLTGSDINW VDVPDCFCFH LWNAWEERTE
401: EGDPVIVVIG SCMSPPDTIF SESGEPTRVE LSEIRLNMRT KESNRKVIVT GVNLEAGHIN RSYVGRKSQF VYIAIADPWP KCSGIAKVDI QNGTVSEFNY
501: GPSRFGGEPC FVPEGEGEED KGYVMGFVRD EEKDESEFVV VDATDMKQVA AVRLPERVPY GFHGTFVSEN QLKEQVF
101: LSGNFAPVNE CPVQNGLEVV GQIPSCLKGV YIRNGANPMF PPLAGHHLFD GDGMIHAVSI GFDNQVSYSC RYTKTNRLVQ ETALGRSVFP KPIGELHGHS
201: GLARLALFTA RAGIGLVDGT RGMGVANAGV VFFNGRLLAM SEDDLPYQVK IDGQGDLETI GRFGFDDQID SSVIAHPKVD ATTGDLHTLS YNVLKKPHLR
301: YLKFNTCGKK TRDVEITLPE PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYVKE KMARFGVLSK QDLTGSDINW VDVPDCFCFH LWNAWEERTE
401: EGDPVIVVIG SCMSPPDTIF SESGEPTRVE LSEIRLNMRT KESNRKVIVT GVNLEAGHIN RSYVGRKSQF VYIAIADPWP KCSGIAKVDI QNGTVSEFNY
501: GPSRFGGEPC FVPEGEGEED KGYVMGFVRD EEKDESEFVV VDATDMKQVA AVRLPERVPY GFHGTFVSEN QLKEQVF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.