Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g053530.1.1 | Tomato | plastid | 90.57 | 79.07 |
| VIT_05s0051g00670.t01 | Wine grape | plastid | 68.57 | 60.7 |
| PGSC0003DMT400071048 | Potato | cytosol, mitochondrion | 59.92 | 60.28 |
| Bra015002.1-P | Field mustard | plastid | 66.01 | 57.44 |
| CDX77467 | Canola | plastid | 66.01 | 57.44 |
| CDX85148 | Canola | cytosol | 65.82 | 57.27 |
| AT3G24220.1 | Thale cress | plastid | 62.87 | 55.46 |
| GSMUA_Achr8P12840_001 | Banana | plastid | 61.49 | 54.34 |
| PGSC0003DMT400039054 | Potato | plastid | 59.53 | 52.24 |
| GSMUA_Achr5P15630_001 | Banana | plastid | 60.71 | 51.93 |
| TraesCS2A01G012300.1 | Wheat | mitochondrion, plastid | 52.65 | 47.27 |
| TraesCS2D01G013000.1 | Wheat | cytosol | 55.99 | 47.26 |
| Os04t0131800-00 | Rice | extracellular | 15.32 | 45.09 |
| PGSC0003DMT400047548 | Potato | cytosol | 25.93 | 34.74 |
| PGSC0003DMT400004978 | Potato | cytosol, mitochondrion, peroxisome | 16.31 | 34.58 |
| PGSC0003DMT400004981 | Potato | plastid | 37.72 | 32.49 |
| PGSC0003DMT400047553 | Potato | plastid | 34.38 | 30.43 |
| PGSC0003DMT400004975 | Potato | plastid | 19.25 | 28.66 |
| PGSC0003DMT400011015 | Potato | plastid | 24.16 | 20.07 |
| PGSC0003DMT400011006 | Potato | cytosol | 23.58 | 19.77 |
Protein Annotations
| MapMan:11.1.1.4 | InterPro:Carotenoid_Oase | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009535 |
| GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009579 | GO:GO:0009628 | GO:GO:0009639 | GO:GO:0010114 |
| GO:GO:0016020 | GO:GO:0016702 | GO:GO:0045549 | GO:GO:0046872 | GO:GO:0055114 | UniProt:M1BNJ1 |
| PFAM:PF03055 | EnsemblPlantsGene:PGSC0003DMG400019162 | PGSC:PGSC0003DMG400019162 | EnsemblPlants:PGSC0003DMT400049305 | PANTHER:PTHR10543 | PANTHER:PTHR10543:SF48 |
| UniParc:UPI0002965AD1 | SEG:seg | : | : | : | : |
Description
9-cis-epoxycarotenoid dioxygenase [Source:PGSC_GENE;Acc:PGSC0003DMG400019162]
Coordinates
chr5:-:48865165..48866694
Molecular Weight (calculated)
57000.1 Da
IEP (calculated)
6.354
GRAVY (calculated)
-0.350
Length
509 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEKLVITKL EKKHKLNRTV DPEIQLEGNF APVHESPVQQ GLEVIGQIPL NLTGVYVRNG ANPLFEPING HHLFDGDGMI HAVKLDSENN KASYSCRFTR
101: TSRLVQEASI GRPVFPKPIG ELHGHLGLAR LALFLARASL GLVDATKGTG VANAGLVYFN GRLLAMAEDD LPYNVIIKED GDLESNGRYN FNGQINDPLI
201: AHPKVDPTTG EFYTLSYNVL KKPYLKFFKF DTWGNKSRDI SISLQNPSMI HDFAITEGHV IIPDYQVVFK LSEMIWGGSP VIHDPNKVSR FGVLSKDDHD
301: ESRIKWIDVP NCFCMHLWNA WEENHEESGD RTIVIIGSCM SPPDSIFSES DEPLKSELTE IRLNLRTGES TRQIIVSGMD LEAGQVNKTR LGQKTRYAFM
401: AIAEPWPKCS GLAKVDLVTG NVTKFLYGDD RFGGEPYFVP STKEGRGEGE DEGYLMSYAR DERKEKSELI IVNAKNMKQM ALVKLPKRVP YGFHGTFVSS
501: QDLCNQSYC
101: TSRLVQEASI GRPVFPKPIG ELHGHLGLAR LALFLARASL GLVDATKGTG VANAGLVYFN GRLLAMAEDD LPYNVIIKED GDLESNGRYN FNGQINDPLI
201: AHPKVDPTTG EFYTLSYNVL KKPYLKFFKF DTWGNKSRDI SISLQNPSMI HDFAITEGHV IIPDYQVVFK LSEMIWGGSP VIHDPNKVSR FGVLSKDDHD
301: ESRIKWIDVP NCFCMHLWNA WEENHEESGD RTIVIIGSCM SPPDSIFSES DEPLKSELTE IRLNLRTGES TRQIIVSGMD LEAGQVNKTR LGQKTRYAFM
401: AIAEPWPKCS GLAKVDLVTG NVTKFLYGDD RFGGEPYFVP STKEGRGEGE DEGYLMSYAR DERKEKSELI IVNAKNMKQM ALVKLPKRVP YGFHGTFVSS
501: QDLCNQSYC
001: MQHSLRSDLL PTKTSPRSHL LPQPKNANIS RRILINPFKI PTLPDLTSPV PSPVKLKPTY PNLNLLQKLA ATMLDKIESS IVIPMEQNRP LPKPTDPAVQ
101: LSGNFAPVNE CPVQNGLEVV GQIPSCLKGV YIRNGANPMF PPLAGHHLFD GDGMIHAVSI GFDNQVSYSC RYTKTNRLVQ ETALGRSVFP KPIGELHGHS
201: GLARLALFTA RAGIGLVDGT RGMGVANAGV VFFNGRLLAM SEDDLPYQVK IDGQGDLETI GRFGFDDQID SSVIAHPKVD ATTGDLHTLS YNVLKKPHLR
301: YLKFNTCGKK TRDVEITLPE PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYVKE KMARFGVLSK QDLTGSDINW VDVPDCFCFH LWNAWEERTE
401: EGDPVIVVIG SCMSPPDTIF SESGEPTRVE LSEIRLNMRT KESNRKVIVT GVNLEAGHIN RSYVGRKSQF VYIAIADPWP KCSGIAKVDI QNGTVSEFNY
501: GPSRFGGEPC FVPEGEGEED KGYVMGFVRD EEKDESEFVV VDATDMKQVA AVRLPERVPY GFHGTFVSEN QLKEQVF
101: LSGNFAPVNE CPVQNGLEVV GQIPSCLKGV YIRNGANPMF PPLAGHHLFD GDGMIHAVSI GFDNQVSYSC RYTKTNRLVQ ETALGRSVFP KPIGELHGHS
201: GLARLALFTA RAGIGLVDGT RGMGVANAGV VFFNGRLLAM SEDDLPYQVK IDGQGDLETI GRFGFDDQID SSVIAHPKVD ATTGDLHTLS YNVLKKPHLR
301: YLKFNTCGKK TRDVEITLPE PTMIHDFAIT ENFVVIPDQQ MVFKLSEMIR GGSPVIYVKE KMARFGVLSK QDLTGSDINW VDVPDCFCFH LWNAWEERTE
401: EGDPVIVVIG SCMSPPDTIF SESGEPTRVE LSEIRLNMRT KESNRKVIVT GVNLEAGHIN RSYVGRKSQF VYIAIADPWP KCSGIAKVDI QNGTVSEFNY
501: GPSRFGGEPC FVPEGEGEED KGYVMGFVRD EEKDESEFVV VDATDMKQVA AVRLPERVPY GFHGTFVSEN QLKEQVF
Arabidopsis Description
NCED69-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRM7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.