Factsheet for PGSC0003DMT400039054

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400028376

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	PGSC0003DMT400028376	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g016720.1.1	Tomato	plastid	97.07	96.9
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	68.97	79.05
VIT_10s0003g03750.t01	Wine grape	plastid	77.24	74.05
Bra012603.1-P	Field mustard	cytosol	55.17	72.4
AT1G30100.1	Thale cress	plastid	69.66	68.59
Bra032359.1-P	Field mustard	plastid	69.31	68.37
CDY61838	Canola	plastid	69.14	68.08
CDY26294	Canola	plastid	68.97	67.91
Zm00001d008638_P001	Maize	cytosol	9.48	67.07
Zm00001d023690_P001	Maize	cytosol	15.0	66.41
Zm00001d027690_P001	Maize	cytosol	8.79	66.23
KRH58642	Soybean	plastid	66.9	65.99
KRH42549	Soybean	plastid	66.03	65.03
AT4G18350.1	Thale cress	cytosol, plastid	65.17	64.84
CDY55629	Canola	cytosol, plastid	65.0	64.67
Os12t0617400-01	Rice	cytosol	31.55	64.66
GSMUA_Achr4P22870_001	Banana	plastid	66.9	64.56
CDY01534	Canola	cytosol, plastid	64.66	64.32
GSMUA_Achr2P12950_001	Banana	plastid	64.66	63.67
GSMUA_Achr5P02570_001	Banana	plastid	66.9	63.61
Bra013298.1-P	Field mustard	plastid	63.62	63.51
CDX99475	Canola	plastid	63.45	63.34
GSMUA_Achr6P31180_001	Banana	plastid	65.52	63.02
CDX78842	Canola	plastid	62.93	62.82
GSMUA_Achr7P01250_001	Banana	plastid	65.17	62.69
GSMUA_Achr4P31460_001	Banana	plastid	64.48	62.02
TraesCS5B01G375900.1	Wheat	plastid	63.28	61.68
TraesCS5A01G374000.1	Wheat	plastid	62.59	61.42
TraesCS5D01G383500.1	Wheat	plastid	62.76	61.18
Zm00001d031086_P001	Maize	plastid	60.0	61.16
Zm00001d000095_P001	Maize	cytosol	17.24	60.98
Os03t0645900-00	Rice	plastid	63.1	60.2
HORVU5Hr1G008050.1	Barley	plastid	62.76	59.97
OQU88453	Sorghum	plastid	59.14	59.86
Zm00001d018819_P001	Maize	plastid	58.97	59.69
TraesCS5B01G029300.1	Wheat	plastid	63.1	59.61
PGSC0003DMT400049305	Potato	cytosol	52.24	59.53
EER93751	Sorghum	plastid	62.59	59.41
TraesCS5D01G038800.1	Wheat	plastid	62.93	59.35
Zm00001d007876_P001	Maize	plastid	58.79	59.3
Zm00001d033222_P001	Maize	extracellular	61.72	59.27
Zm00001d013689_P001	Maize	plastid	60.86	58.74
HORVU5Hr1G054970.1	Barley	cytosol	61.55	58.72
TraesCS2D01G251600.1	Wheat	plastid	58.45	58.25
Zm00001d041319_P001	Maize	plastid	60.17	57.78
Os07t0154100-01	Rice	plastid	57.93	57.73
HORVU5Hr1G092850.2	Barley	plastid	63.1	56.83
HORVU5Hr1G044510.1	Barley	cytosol	58.62	56.67
TraesCS2B01G268400.1	Wheat	plastid	57.93	56.38
TraesCS2A01G250600.1	Wheat	plastid	57.24	55.99
Zm00001d000157_P001	Maize	cytosol	10.0	55.24
Zm00001d023458_P001	Maize	cytosol	11.72	48.23
Zm00001d042076_P001	Maize	cytosol, plastid	33.79	46.67
Zm00001d022623_P001	Maize	cytosol	27.59	42.9
Zm00001d035724_P001	Maize	plastid	40.86	37.32
PGSC0003DMT400047548	Potato	cytosol	24.14	36.84
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	13.79	33.33
Zm00001d019813_P001	Maize	plastid	10.69	32.8
PGSC0003DMT400004981	Potato	plastid	33.28	32.66
PGSC0003DMT400047553	Potato	plastid	32.24	32.52
PGSC0003DMT400004975	Potato	plastid	17.24	29.24
Zm00001d009286_P001	Maize	plastid	11.38	26.19
Zm00001d027592_P001	Maize	mitochondrion	18.97	25.82
Zm00001d033377_P001	Maize	plastid	11.72	23.94
PGSC0003DMT400011015	Potato	plastid	25.0	23.65
PGSC0003DMT400011006	Potato	cytosol	24.66	23.56

Protein Annotations

EMBL:AY662343	EnsemblPlants:PGSC0003DMT400039054	EnsemblPlantsGene:PGSC0003DMG400015100	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	PFAM:PF03055	PGSC:PGSC0003DMG400015100	ProteinID:AAT75152
ProteinID:AAT75152.1	UniParc:UPI000295BF9C	UniProt:M1B7Q2	MapMan:11.1.1.4	:	:

Description

9-cis-epoxy-carotenoid dioxygenase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400015100]

Coordinates

chr8:+:10998923..11001084

Molecular Weight (calculated)

64712.0 Da

IEP (calculated)

6.562

GRAVY (calculated)

-0.338

Length

580 amino acids

Sequence
(BLAST)

001: MTSTIANYGV SHSFSPSTSY SLDFTLPSKS ISMKNHTTKT KIHSALLTFP KQNNTPKKQP QFQTPDWNFF QKAAAKALDI VESALVSREL QNPLPKTADP
101: RVQIAGNFAP VPEQSVRHNL PVIGTIPDCI NGVYVRNGAN PLFEPVAGHH LFDGDGMVHA VTVENGSVSY SCRFTETERL VQERELGRPV FPKAIGELHG
201: HSGIARLLLF YARGVFGLVD HSHGTGVANA GLVYFNNRLL AMSEDDVPYN VQVLPSGDLQ TVGRYNFDDQ LKSTMIAHPK IDPVSGELFA LSYDVVQKPY
301: LKSFKFSPDG EKSPDVEIPL DVPTMMHDFA ITENYVVIPD QQVVFKLQEM IKGGSPVIYD KNKKSRFGIL PKNAKDSDNI IWVESPETFC FHLWNAWEEP
401: ETDEVVVIGS CMTPPDSIFK ECSENLKSVL SEIRLNLKTG ESTRRQLLSP SDQVNLEAGM VNRNKLGRKT QFTYLAIAEP WPKVSGFAKV DLSTGEIKKH
501: IYGDKRYGGE PLFLPRNVNS EKEDDGYILA FCHDEKTWKS ELQIVNAMTL ELEATVKLPS RVPYGFHGTF ISSKDLQNQV

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.