Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G30100.1 | KRG94930 | AT5G17790.1 | 15340011 |
| AT1G30100.1 | KRH64967 | AT5G17790.1 | 15340011 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH42549 | Soybean | plastid | 89.46 | 89.3 |
| Bra012603.1-P | Field mustard | cytosol | 51.53 | 68.55 |
| PGSC0003DMT400039054 | Potato | plastid | 65.99 | 66.9 |
| Solyc08g016720.1.1 | Tomato | plastid | 65.14 | 65.92 |
| VIT_10s0003g03750.t01 | Wine grape | plastid | 67.69 | 65.79 |
| Bra032359.1-P | Field mustard | plastid | 64.46 | 64.46 |
| CDY26294 | Canola | plastid | 64.29 | 64.18 |
| CDY61838 | Canola | plastid | 63.95 | 63.84 |
| AT1G30100.1 | Thale cress | plastid | 63.78 | 63.67 |
| Bra013298.1-P | Field mustard | plastid | 60.88 | 61.62 |
| AT4G18350.1 | Thale cress | cytosol, plastid | 61.05 | 61.58 |
| CDY55629 | Canola | cytosol, plastid | 61.05 | 61.58 |
| CDY01534 | Canola | cytosol, plastid | 61.05 | 61.58 |
| CDX78842 | Canola | plastid | 60.37 | 61.1 |
| CDX99475 | Canola | plastid | 60.2 | 60.93 |
| KRH43866 | Soybean | plastid | 44.73 | 57.3 |
| KRH45171 | Soybean | plastid | 13.27 | 47.27 |
| KRH13600 | Soybean | plastid | 43.37 | 44.35 |
| KRH20815 | Soybean | cytosol, endoplasmic reticulum, extracellular | 32.65 | 33.45 |
| KRH27468 | Soybean | endoplasmic reticulum, mitochondrion | 30.61 | 33.33 |
| KRH76475 | Soybean | plastid | 32.82 | 32.71 |
| KRH52736 | Soybean | mitochondrion, plastid | 26.7 | 26.75 |
| KRH62062 | Soybean | cytosol, plastid | 25.51 | 25.91 |
| KRH62063 | Soybean | cytosol | 21.26 | 25.88 |
| KRH52732 | Soybean | plastid | 25.17 | 25.47 |
Protein Annotations
| EMBL:ACUP02003280 | EnsemblPlants:KRH58642 | EnsemblPlantsGene:GLYMA_05G140900 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016702 | GO:GO:0046872 | GO:GO:0051213 | GO:GO:0055114 |
| InterPro:Carotenoid_Oase | PANTHER:PTHR10543 | PANTHER:PTHR10543:SF42 | PFAM:PF03055 | ProteinID:KRH58642 | ProteinID:KRH58642.1 |
| SEG:seg | UniParc:UPI00023C45E6 | UniProt:I1K3F0 | MapMan:11.1.1.4 | : | : |
Description
hypothetical protein
Coordinates
chr5:+:33421825..33423591
Molecular Weight (calculated)
65609.3 Da
IEP (calculated)
6.439
GRAVY (calculated)
-0.297
Length
588 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALNSSTWA KPQFHHPLSS SSSLLTDMGF PTRFPKKPIG EVVNCALHSP PVTHFPNQPF TKTLQITKEP TYPPAERPQW NPFQKAAAKA LDMFESALLS
101: RELSQPLPKT TDPRVQIAGN FAPVPEHPVQ HSLPVIGTIP DAVNGVYLRN GANPLFHPKA GHHLFDGDGM VHAVKINHGT ASYACRFTET QRLMQEHALG
201: KPVFPKAIGE LHGHSGIARL MLFYARGLCG IVDHRSGAGS ANAGLVFFNG KLLAMSEDDL PYELRITASG DLETIGRYSF HDQLNSSMIA HPKVDPISGE
301: LFTLSYDVTS KYLKYFRFSP EEEKKSPDVE IPLGAATMTH DFAITENFVV IPDQKVVFKL GEMIKGGSPV IYDDEKKSRF GILPKYASDA SSIVWVESPD
401: TFFFHFWNAW EERETDEVVV IGSCMTPPDS IFKDTEESLK SVLTEIRLNI RSGKSTRRVV VEEMNLEAGM VNRNRLGRKT RFAYLCIAEP WPKVSGFAKV
501: DLESGEVKRH EYGERRFGGE PFFLPTRGEN GNEDEGYVMA FVHDEVTWQS ELQILNALDL KLEATIMLPS RVPYGFHGTF VEAMDLPQ
101: RELSQPLPKT TDPRVQIAGN FAPVPEHPVQ HSLPVIGTIP DAVNGVYLRN GANPLFHPKA GHHLFDGDGM VHAVKINHGT ASYACRFTET QRLMQEHALG
201: KPVFPKAIGE LHGHSGIARL MLFYARGLCG IVDHRSGAGS ANAGLVFFNG KLLAMSEDDL PYELRITASG DLETIGRYSF HDQLNSSMIA HPKVDPISGE
301: LFTLSYDVTS KYLKYFRFSP EEEKKSPDVE IPLGAATMTH DFAITENFVV IPDQKVVFKL GEMIKGGSPV IYDDEKKSRF GILPKYASDA SSIVWVESPD
401: TFFFHFWNAW EERETDEVVV IGSCMTPPDS IFKDTEESLK SVLTEIRLNI RSGKSTRRVV VEEMNLEAGM VNRNRLGRKT RFAYLCIAEP WPKVSGFAKV
501: DLESGEVKRH EYGERRFGGE PFFLPTRGEN GNEDEGYVMA FVHDEVTWQS ELQILNALDL KLEATIMLPS RVPYGFHGTF VEAMDLPQ
001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
Arabidopsis Description
NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.