CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, vacuole

Predictor Summary:

plastid 3
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRH16959
KRH24006
KRH27971
KRH29310
KRH44614
KRH47290
KRH53667
KRH56614
KRH64261
KRH76475
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17790.1	KRH44614	AT1G51580.1	21798944
AT5G17790.1	KRH47290	AT1G51580.1	21798944
AT5G17790.1	KRG93305	AT3G27960.1	21798944
AT5G17790.1	KRH56614	AT3G27960.1	21798944
AT5G17790.1	KRH24006	AT3G48150.1	21798944
AT5G17790.1	KRH27971	AT3G48150.1	21798944
AT5G17790.1	KRH29310	AT3G48150.1	21798944
AT5G17790.1	KRH77487	AT3G48150.1	21798944
AT5G17790.1	KRH16959	AT3G49580.1	21798944
AT5G17790.1	KRH53667	AT3G49580.1	21798944
AT5G17790.1	KRH64261	AT3G49580.1	21798944
AT5G17790.1	KRH76475	AT4G19170.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64967	Soybean	plastid	81.63	82.83
VIT_08s0056g01170.t01	Wine grape	endoplasmic reticulum, plastid	51.5	48.81
CDX78760	Canola	plastid, vacuole	37.33	44.37
CDX70775	Canola	plastid	36.49	43.99
PGSC0003DMT400028376	Potato	plastid	45.74	43.84
Solyc01g057780.2.1	Tomato	mitochondrion, plastid	45.5	43.36
Bra006420.1-P	Field mustard	plastid, vacuole	37.09	43.16
CDY38459	Canola	plastid	37.09	43.16
Bra002106.1-P	Field mustard	plastid	36.73	42.74
CDY16887	Canola	plastid	35.65	41.42
AT5G17790.1	Thale cress	plastid	36.61	40.24
EES01648	Sorghum	plastid	39.62	36.71
Zm00001d012529_P001	Maize	plastid	38.66	35.66
Os01t0815700-01	Rice	plastid	40.22	35.26
Zm00001d043095_P004	Maize	mitochondrion	38.78	33.61
TraesCS3B01G370800.2	Wheat	plastid	40.94	31.08
HORVU3Hr1G080150.3	Barley	mitochondrion, nucleus, plastid	40.58	30.81
TraesCS3A01G339100.1	Wheat	nucleus	39.86	30.1
GSMUA_Achr7P21740_001	Banana	nucleus	40.58	30.07
TraesCS3D01G332700.1	Wheat	plastid	39.62	29.89
GSMUA_Achr7P02560_001	Banana	plastid, vacuole	24.85	28.79
KRH48632	Soybean	mitochondrion, plastid	13.21	23.81
KRH39085	Soybean	plastid	12.73	23.14
KRH33226	Soybean	nucleus	7.8	19.94
KRH70339	Soybean	mitochondrion	11.64	18.37
KRH68541	Soybean	nucleus	13.33	13.2
KRG96827	Soybean	nucleus	12.48	12.29

Protein Annotations

EntrezGene:100792849	MapMan:16.12.5.3	Gene3D:4.10.1060.10	UniProt:A0A0R0EUK5	EMBL:ACUP02012063	EnsemblPlantsGene:GLYMA_19G118900
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001876	EnsemblPlants:KRG94930	ProteinID:KRG94930
ProteinID:KRG94930.1	PFAM:PF00641	ScanProsite:PS01358	PFscan:PS50199	PANTHER:PTHR23111	PANTHER:PTHR23111:SF30
SMART:SM00547	SUPFAM:SSF90209	UniParc:UPI0006ED656D	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr19:+:37650708..37656934

Molecular Weight (calculated)

92980.3 Da

IEP (calculated)

6.417

GRAVY (calculated)

-0.728

Length

833 amino acids

Sequence
(BLAST)

001: MGGVAPRFLF LLATPFPLLR RHHHHHHHRN LFLLSTHSLH LSSSPSPLPL KLKASQSQAS SFSSSSWPEW SSFLSHISSA GYLPSLPDQT FTAAAERLSY
101: SFLRDATAFL AFARDRPNLL RLLSTRDIAA VVEHGSPFLF RDADDSVRKM KSFLSNGDAN VLDTDRANTV DLMKFLLSYA SNPFFSSEGN SLNKRDLVES
201: SVRNLFGELF KLNYSAPGPN AFDSVQSQMA GRFGLTKPPG QKIEMKRGDW LCPRCNFMNF ARNIKCLECE EARPKRQLAG GEWECPQCDF YNYGRNMTCL
301: RCDCKRPGQI SLGATNTMPN MGYENGNNPN TSDIDARLAA NEEKAQRWFS KVSQLDSSAD INSVMADEDF PEIMPLRKGV NRFVVSTRKT PLERRLANAQ
401: YKRNLSNNDI PGIEDSKAGE PIKSHDNLDE MLRRSGGLPQ FDNNNFVDEQ NASGDSHPSF ASNTSHFNNV KGSYTSTVPP IPLSADALSQ KSENLLAEES
501: KKVVLDADVG YARLGDCSQL SNNSTSQNIT EEDKEKEQGE KSERWFRKVA ELNDFPDIPS AISDEDFPEI MPMRKGENRF VVSKKKDRSL TTPAYKRLAA
601: MEQSGKTNFV PFVPFPPDYF AKKDKQQEDG TDSSVADATA LTDRADDDTS FISEVVQQPP EMSVDARAQR GQSPNPSEQS SNNNDVGSMY GATTSGNSRQ
701: SFNQDQVPNL TGSSSPEPAS ETQSGRAEWT RKSLEGSAVK EPDPLDMSEE AKAERWFRRI AQIKDISELS QIPDEDFPSI MPMRKGVNRF VVSKRKTPLE
801: RRLTSQQYRR NLPTASSDPI KKENEEGCPS GVF

Best Arabidopsis Sequence Match ( AT5G17790.1 )
(BLAST)

001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK

Arabidopsis Description

VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.