Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70775 | Canola | plastid | 54.88 | 60.2 |
| Bra006420.1-P | Field mustard | plastid, vacuole | 55.94 | 59.22 |
| CDX78760 | Canola | plastid, vacuole | 54.75 | 59.2 |
| CDY16887 | Canola | plastid | 55.41 | 58.58 |
| CDY38459 | Canola | plastid | 55.28 | 58.52 |
| Bra002106.1-P | Field mustard | plastid | 54.88 | 58.1 |
| KRG94930 | Soybean | mitochondrion, plastid, vacuole | 40.24 | 36.61 |
| KRH64967 | Soybean | plastid | 39.58 | 36.54 |
| VIT_08s0056g01170.t01 | Wine grape | endoplasmic reticulum, plastid | 42.08 | 36.29 |
| Solyc01g057780.2.1 | Tomato | mitochondrion, plastid | 37.99 | 32.95 |
| PGSC0003DMT400028376 | Potato | plastid | 37.73 | 32.91 |
| EES01648 | Sorghum | plastid | 37.73 | 31.81 |
| Zm00001d012529_P001 | Maize | plastid | 36.94 | 31.01 |
| Os01t0815700-01 | Rice | plastid | 38.39 | 30.63 |
| Zm00001d043095_P004 | Maize | mitochondrion | 36.02 | 28.41 |
| GSMUA_Achr7P02560_001 | Banana | plastid, vacuole | 25.73 | 27.12 |
| HORVU3Hr1G080150.3 | Barley | mitochondrion, nucleus, plastid | 37.73 | 26.07 |
| TraesCS3B01G370800.2 | Wheat | plastid | 37.6 | 25.98 |
| TraesCS3A01G339100.1 | Wheat | nucleus | 36.81 | 25.29 |
| TraesCS3D01G332700.1 | Wheat | plastid | 36.54 | 25.09 |
| GSMUA_Achr7P21740_001 | Banana | nucleus | 37.2 | 25.09 |
| AT1G48570.1 | Thale cress | plastid | 11.74 | 19.56 |
| AT1G70650.2 | Thale cress | nucleus | 12.27 | 15.63 |
| AT1G55040.1 | Thale cress | nucleus, plastid | 15.04 | 13.43 |
Protein Annotations
| MapMan:16.12.5.3 | Gene3D:2.20.28.140 | Gene3D:4.10.1060.10 | EntrezGene:831647 | ProteinID:AED92469.1 | ArrayExpress:AT5G17790 |
| EnsemblPlantsGene:AT5G17790 | RefSeq:AT5G17790 | TAIR:AT5G17790 | RefSeq:AT5G17790-TAIR-G | EnsemblPlants:AT5G17790.1 | TAIR:AT5G17790.1 |
| EMBL:AY050223 | EMBL:AY075645 | Unigene:At.31509 | ProteinID:BAB09578.1 | EMBL:BT002233 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009570 | GO:GO:0009658 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0046872 | GO:GO:1900871 |
| InterPro:IPR001876 | RefSeq:NP_197281.1 | PFAM:PF00641 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | ScanProsite:PS01358 | PFscan:PS50199 | PANTHER:PTHR23111 | PANTHER:PTHR23111:SF30 |
| UniProt:Q8S9K3 | SMART:SM00547 | SUPFAM:SSF90209 | UniParc:UPI00000502AA | Symbol:VAR3 | InterPro:Znf_RanBP2 |
| InterPro:Znf_RanBP2_sf | SEG:seg | : | : | : | : |
Description
VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
Coordinates
chr5:-:5869696..5872782
Molecular Weight (calculated)
85949.5 Da
IEP (calculated)
8.450
GRAVY (calculated)
-0.750
Length
758 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.