Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96267 | Canola | mitochondrion | 52.44 | 67.1 |
| Bra016196.1-P | Field mustard | mitochondrion, nucleus | 50.76 | 65.09 |
| CDY11563 | Canola | mitochondrion | 49.92 | 64.43 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.72 | 40.98 |
| VIT_01s0011g05660.t01 | Wine grape | nucleus | 30.08 | 40.5 |
| PGSC0003DMT400064951 | Potato | mitochondrion, nucleus | 31.76 | 39.38 |
| Solyc08g014510.2.1 | Tomato | nucleus, plastid | 30.76 | 38.12 |
| KRH70339 | Soybean | mitochondrion | 33.61 | 37.88 |
| Os03t0712200-01 | Rice | mitochondrion | 32.27 | 36.71 |
| TraesCS4A01G267600.1 | Wheat | mitochondrion | 31.76 | 35.86 |
| KXG37731 | Sorghum | mitochondrion | 31.09 | 35.17 |
| TraesCS4B01G046800.1 | Wheat | mitochondrion | 31.26 | 35.16 |
| TraesCS4D01G046600.1 | Wheat | mitochondrion | 30.92 | 34.78 |
| HORVU4Hr1G007570.1 | Barley | nucleus | 18.82 | 34.46 |
| KRH33226 | Soybean | nucleus | 18.82 | 34.36 |
| Zm00001d013432_P001 | Maize | mitochondrion | 30.42 | 34.35 |
| AT1G48570.1 | Thale cress | plastid | 20.5 | 26.81 |
| AT1G55040.1 | Thale cress | nucleus, plastid | 20.67 | 14.49 |
| AT5G17790.1 | Thale cress | plastid | 15.63 | 12.27 |
Protein Annotations
| MapMan:16.12.5.3 | MapMan:19.2.2.1.6.1.2 | Gene3D:3.10.110.10 | Gene3D:4.10.1060.10 | EntrezGene:843402 | ProteinID:AEE35095.1 |
| ArrayExpress:AT1G70650 | EnsemblPlantsGene:AT1G70650 | RefSeq:AT1G70650 | TAIR:AT1G70650 | RefSeq:AT1G70650-TAIR-G | EnsemblPlants:AT1G70650.2 |
| TAIR:AT1G70650.2 | Unigene:At.18114 | UniProt:F4I6V2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR000608 | InterPro:IPR001876 | InterPro:IPR016135 | RefSeq:NP_001185364.1 | PFAM:PF00179 | PFAM:PF00641 |
| PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0025022 | ScanProsite:PS01358 |
| PFscan:PS50127 | PFscan:PS50199 | PANTHER:PTHR23111 | PANTHER:PTHR23111:SF23 | SMART:SM00212 | SMART:SM00547 |
| SUPFAM:SSF54495 | SUPFAM:SSF90209 | InterPro:UBQ-conjugat_E2 | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI0001E92B6D | InterPro:Znf_RanBP2 |
| InterPro:Znf_RanBP2_sf | SEG:seg | : | : | : | : |
Description
Ran BP2/NZF zinc finger-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I6V2]
Coordinates
chr1:+:26638075..26642268
Molecular Weight (calculated)
68314.3 Da
IEP (calculated)
8.075
GRAVY (calculated)
-0.762
Length
595 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRFFKTDHR LFHRIIGYTR PFHGLAKTQN AEIARPGLVD PSSHPWPEWL DLMGMLAKKG YFEESLIPLM SSKESNHIRT ACLNFARHRF TLVRNLSKKD
101: IKVIAGCGCP STDRKVVNSG KRLRAYVGID EGNVCGSCNL RGKCERAYAQ ARDDEGARTI DVMRLLLTYG LDSISPTVEN RACQTKLVED SVRKLLRESV
201: AYSLTDFESA ETETAGDELQ PNSQDIDERD PRKRPGDWYC TECKFLNFAK NIRCLRCDVF SEERLKQLKE EQKDHLPLKK GDWICQTCNF LNFSKNTRCL
301: RCKDKPTLRQ INPGEWECES CNYINFRRNS ICLKCDHKRQ KAANVTPDSK TVADRQSGVT KTWSFVEEES VKRCNGEEEE EEDGFMGFPV EGGRSNVSKS
401: AEKREQWKLE MTQRIRSNGT KAKKDDNTKN ETESKCYDRR RNELLVPRNF RLLEELERGE KGIGDGTVSY GMDDADDILM QSWTGTILGP HNTAYEGKIF
501: QLKLFCGKDY PESPPTVRFQ SRINMACVNP ENGVVDPSHF PMLSNWRREF TMEDLLIQLK KEMMSSQNRK LAQPLEGNEE GRTDPKGLVV KCCVM
101: IKVIAGCGCP STDRKVVNSG KRLRAYVGID EGNVCGSCNL RGKCERAYAQ ARDDEGARTI DVMRLLLTYG LDSISPTVEN RACQTKLVED SVRKLLRESV
201: AYSLTDFESA ETETAGDELQ PNSQDIDERD PRKRPGDWYC TECKFLNFAK NIRCLRCDVF SEERLKQLKE EQKDHLPLKK GDWICQTCNF LNFSKNTRCL
301: RCKDKPTLRQ INPGEWECES CNYINFRRNS ICLKCDHKRQ KAANVTPDSK TVADRQSGVT KTWSFVEEES VKRCNGEEEE EEDGFMGFPV EGGRSNVSKS
401: AEKREQWKLE MTQRIRSNGT KAKKDDNTKN ETESKCYDRR RNELLVPRNF RLLEELERGE KGIGDGTVSY GMDDADDILM QSWTGTILGP HNTAYEGKIF
501: QLKLFCGKDY PESPPTVRFQ SRINMACVNP ENGVVDPSHF PMLSNWRREF TMEDLLIQLK KEMMSSQNRK LAQPLEGNEE GRTDPKGLVV KCCVM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.