Factsheet for AT1G55040.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41729	Canola	nucleus	72.44	74.28
Bra027952.1-P	Field mustard	nucleus	72.79	74.1
CDY53578	Canola	nucleus	69.96	71.48
VIT_14s0128g00850.t01	Wine grape	plastid	43.46	44.95
PGSC0003DMT400063483	Potato	mitochondrion, plastid	40.16	44.0
Solyc01g099230.2.1	Tomato	mitochondrion, plastid	40.28	43.68
KRH68541	Soybean	nucleus	43.23	43.64
KRG96827	Soybean	nucleus	42.87	43.03
Os07t0404300-01	Rice	nucleus	31.45	41.27
GSMUA_Achr11P...	Banana	mitochondrion	36.87	40.08
TraesCS6A01G359500.1	Wheat	mitochondrion	37.1	38.6
TraesCS6B01G392400.1	Wheat	mitochondrion	37.1	38.37
TraesCS6D01G342400.1	Wheat	mitochondrion	36.4	37.73
EER98389	Sorghum	mitochondrion, plastid	33.8	35.96
AT1G48570.1	Thale cress	plastid	13.78	25.71
AT1G70650.2	Thale cress	nucleus	14.49	20.67
AT5G17790.1	Thale cress	plastid	13.43	15.04

Protein Annotations

MapMan:16.12.5.3	Gene3D:4.10.1060.10	EntrezGene:841947	ProteinID:AAG51125.1	ProteinID:AEE33177.1	ArrayExpress:AT1G55040
EnsemblPlantsGene:AT1G55040	RefSeq:AT1G55040	TAIR:AT1G55040	RefSeq:AT1G55040-TAIR-G	EnsemblPlants:AT1G55040.1	TAIR:AT1G55040.1
Unigene:At.26530	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005739	GO:GO:0007275
GO:GO:0008150	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0046872	GO:GO:0048046
InterPro:IPR001876	RefSeq:NP_564674.1	PFAM:PF00641	PO:PO:0000005	PO:PO:0000293	PO:PO:0001078
PO:PO:0009010	ScanProsite:PS01358	PFscan:PS50199	PANTHER:PTHR23111	PANTHER:PTHR23111:SF29	UniProt:Q9C7M2
SMART:SM00547	SUPFAM:SSF90209	UniParc:UPI00000A3B2A	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg

Description

Uncharacterized protein F14C21.55 [Source:UniProtKB/TrEMBL;Acc:Q9C7M2]

Coordinates

chr1:+:20534874..20539189

Molecular Weight (calculated)

94868.4 Da

IEP (calculated)

7.022

GRAVY (calculated)

-0.995

Length

849 amino acids

Sequence
(BLAST)

001: MAASISLLLI KRISHLHINP KSHRLFQPFL TKSLSTSPQS NTESTHEPNH KPSSLSSRLS FVFDQIDAIE KRHSEKDETL ERIRAWRQSK QTHQLKTPPS
101: APQQDPDLRE VESVVSNDKL DSCVVLEPIQ IDSGELSKEK GVIELVHPWP EWMELMERLV KQNYFDHRRE RDDDDMVNSL GIDVSSVGLG EDENVGVALF
201: QDFRAVQNAC SNFGKDRFDI LRSLSRNDIQ ILVGHGCPAT DRKVVFSGKL LRKRVHLDEG DVCSSCSLRN SCEKAFLLTN KEDEARTIDL MRILFTYGFD
301: PLNGTVANKS LLKKKSVKSV VRKLLHEIVK LSAVPIDPNL TPPVIKRAPP KVKQPPPTPK RRVGRDDVEM KKGDWLCPKC DFMNFAKNTI CLQCDAKRPK
401: RQLLPGEWEC PECNFLNYRR NMACFHCDCK RPADAILENK PQETYRFTEA QTDRVVKRDD VSNAWNFDFD DDESDGAEVA AFEYADSSKK NENLLREGLR
501: DPEEEFGNLP PGARESSEFG RSRRPGVGFD DFDDEDDIDS YEIDESKERD VPVEGARSSF ASDEFSEDEK FPESKSGFNA HRGGSSNFHN SGKKHGNSKG
601: GFSRDDELGF SSDDEVSANP RWKSSHVAST QRGPPSRKLT FGSDEEFGLD SDMEDDSPRS GLRRGQRNNG ARGGFKGKRS SYSASESDDD MDDQEYRGSS
701: FSGNRSRGSR GRMRGGGRGG FNDNFASDSY RGSNGSSANR SRGRGGRIGS RRSSFDSDDE DYRGSSSSAS RSRGNREDSG GVGGRMGSRR GGFDDEFDRK
801: SSRGRGSGSF RGSNRGGRGG GGGGNRHGHS DGKDTDVGDF RNSRRVIER

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.