Factsheet for AT1G48570.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018736.1-P	Field mustard	plastid	73.19	79.86
CDX93678	Canola	plastid	72.75	79.38
CDY40590	Canola	plastid	69.23	76.09
VIT_17s0000g02310.t01	Wine grape	mitochondrion, plastid	43.74	48.54
KRH39085	Soybean	plastid	41.32	41.05
Solyc03g118680.2.1	Tomato	plastid	35.82	40.05
KRH48632	Soybean	mitochondrion, plastid	40.22	39.61
PGSC0003DMT400014472	Potato	plastid	35.38	39.56
GSMUA_Achr6P24110_001	Banana	plastid	32.53	34.74
Os03t0708900-01	Rice	nucleus	29.89	26.98
HORVU4Hr1G007170.4	Barley	cytosol, nucleus	28.79	26.41
Zm00001d013449_P001	Maize	mitochondrion	29.89	26.36
TraesCS4A01G269900.1	Wheat	plastid	31.65	24.87
TraesCS4D01G041700.1	Wheat	mitochondrion, plastid	31.43	24.74
TraesCS4B01G044200.1	Wheat	plastid	31.21	24.52
EER93589	Sorghum	mitochondrion, plastid	29.67	24.28
AT1G70650.2	Thale cress	nucleus	26.81	20.5
AT1G55040.1	Thale cress	nucleus, plastid	25.71	13.78
AT5G17790.1	Thale cress	plastid	19.56	11.74

Protein Annotations

MapMan:16.12.5.3	Gene3D:4.10.1060.10	EntrezGene:841278	UniProt:A0A178W414	ProteinID:AAF79711.1	ProteinID:AEE32317.1
ArrayExpress:AT1G48570	EnsemblPlantsGene:AT1G48570	RefSeq:AT1G48570	TAIR:AT1G48570	RefSeq:AT1G48570-TAIR-G	EnsemblPlants:AT1G48570.1
TAIR:AT1G48570.1	EMBL:AY065170	EMBL:BT000067	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR001876	RefSeq:NP_175290.1	ProteinID:OAP13259.1	PFAM:PF00641	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185
PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115
PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006
PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038
PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	ScanProsite:PS01358	PFscan:PS50199
PANTHER:PTHR23111	PANTHER:PTHR23111:SF40	UniProt:Q9LP67	SMART:SM00547	SUPFAM:SSF90209	UniParc:UPI00000ABEFD
InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:	:

Description

T1N15.19 [Source:UniProtKB/TrEMBL;Acc:Q9LP67]

Coordinates

chr1:-:17953870..17957719

Molecular Weight (calculated)

51820.2 Da

IEP (calculated)

8.555

GRAVY (calculated)

-0.662

Length

455 amino acids

Sequence
(BLAST)

001: MSSSRIFLVG NSIFRPHKPS FPLSFNRFPS VSLRFRCFSS DAAAAVATTV DSDSPSLTPH PWPEWITFVD RLKTKGYFTK DTEDDTVYQE MILVKDACLS
101: FARDRYDVLR SLSSGDVQAL VERGCPNLFR KTVNSSKRIR AHVKLNEGDV CGSCDLRSSC DRAYVILKDT EADARTVDVM RLLLFNALDS IVISRGEVPP
201: GKELVHESAR RLLLELVEFS EKPLIPALPK PSSKESSLPS KERAFKSRND EPSQRVAFKS RNDDPSQRVA FKSRNDEPSH RVAFKSRNDE SSQRDRPLYS
301: ADWACPKCDF VNFARNERCR ECNEVADRRP VAAVVKEGDW LCPECSFLNF TRNQSCLKCK AKGPKKTSMV NIVEMKKGDW NCTGCGYMNF ASNKQCRECR
401: EQRHKTLAEP GDWECPSCDF VNFRRNDACK KCECKRPSQA NNDQEDHTWK RPALV

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.