Factsheet for Os03t0708900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
mitochondrion 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 23303719

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G007170.4	Barley	cytosol, nucleus	54.56	55.44
Zm00001d013449_P001	Maize	mitochondrion	53.37	52.13
TraesCS4A01G269900.1	Wheat	plastid	59.72	51.99
TraesCS4B01G044200.1	Wheat	plastid	58.93	51.3
TraesCS4D01G041700.1	Wheat	mitochondrion, plastid	58.73	51.21
EER93589	Sorghum	mitochondrion, plastid	54.37	49.28
GSMUA_Achr6P24110_001	Banana	plastid	40.87	48.36
Solyc03g118680.2.1	Tomato	plastid	32.74	40.54
PGSC0003DMT400014472	Potato	plastid	32.54	40.29
VIT_17s0000g02310.t01	Wine grape	mitochondrion, plastid	30.95	38.05
KRH39085	Soybean	plastid	31.55	34.72
CDY40590	Canola	plastid	28.17	34.3
Bra018736.1-P	Field mustard	plastid	28.37	34.29
KRH48632	Soybean	mitochondrion, plastid	31.15	33.98
CDX93678	Canola	plastid	27.98	33.81
AT1G48570.1	Thale cress	plastid	26.98	29.89
Os03t0712200-01	Rice	mitochondrion	27.18	26.2
Os07t0404300-01	Rice	nucleus	25.4	19.78
Os01t0815800-01	Rice	nucleus	5.56	17.28
Os01t0815700-01	Rice	plastid	21.23	11.26

Protein Annotations

MapMan:16.12.5.3	Gene3D:4.10.1060.10	EntrezGene:4333869	ProteinID:ABF98489.1	EMBL:AK073541	ProteinID:BAF12955.1
ProteinID:BAS86003.1	ProteinID:EEE59786.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001876
EnsemblPlantsGene:Os03g0708900	EnsemblPlants:Os03t0708900-01	PFAM:PF00641	ScanProsite:PS01358	PFscan:PS50199	PANTHER:PTHR23111
PANTHER:PTHR23111:SF40	UniProt:Q10E42	SMART:SM00547	SUPFAM:SSF90209	SignalP:SignalP-noTM	UniParc:UPI0000DB4AED
RefSeq:XP_015628131.1	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:

Description

Zinc finger, RanBP2-type domain containing protein. (Os03t0708900-01)

Coordinates

chr3:+:28588615..28593641

Molecular Weight (calculated)

55751.5 Da

IEP (calculated)

8.144

GRAVY (calculated)

-0.699

Length

504 amino acids

Sequence
(BLAST)

001: MASSSKLLAL TLTSSFLRSS LLPAPSRRLP TGPLLSLRFC SAAGDVADAP AAAAAPDHPW PEWGDFLEKL RAKGYFEQPT LASRADAAEG EVAATAAAAA
101: AAAGEDPGAS ADNYPSKDLN RLKNACLKFG RERFDLLSVL PKQDIRAIVE CGCPNIFRKP VNSAKRLREF LQIDEGDACS ACKLRGSCDK AYVIPNAEDE
201: ARTVDVMRIL LNYAIDPTSL SGENSVNGGV QESARKLLSE LTMLSDTTID PSIPKPVFQT SSKTKTFDKG IAKPKFSAGK GRETTETEMK KGDWLCPNCN
301: FLNFARNRHC LECKADGPKK IETATTEMKT GDWICPQCHF MNFARNKMCF KCEESRPKRQ LIPGEWECPS CSFVNFRRNK VCLKCKHEGP ENDTHDSQHG
401: HNRWRNTRGA DRSRSFDDSF DREDDGSDPD EGERRRAKVR TRAASTLGRS TGKSKIFDSI HEDGNGREDD SEDVLPYEGQ RRHIVSKRAT PAQRRFTAGR
501: SEDI

Best Arabidopsis Sequence Match ( AT1G70650.1 )
(BLAST)

001: MLRFFKTDHR LFHRIIGYTR PFHGLAKTQN AEIARPGLVD PSSHPWPEWL DLMGMLAKKG YFEESLIPLM SSKESNHIRT ACLNFARHRF TLVRNLSKKD
101: IKVIAGCGCP STDRKVVNSG KRLRAYVGID EGNVCGSCNL RGKCERAYAQ ARDDEGARTI DVMRLLLTYG LDSISPTVEN RACQTKLVED SVRKLLRESV
201: AYSLTDFESA ETETAGDELQ PNSQDIDERD PRKRPGDWYC TECKFLNFAK NIRCLRCDVF SEERLKQLKE EQKDHLPLKK GDWICQTCNF LNFSKNTRCL
301: RCKDKPTLRQ INPGEWECES CNYINFRRNS ICLKCDHKRQ KAANVTPDSK TVADRQSGVT KTWSFVEEES VKRCNGEEEE EEDGFMGFPV EGGRSNVSKS
401: AEKREQWKLE MTQRIRSNGT KAKKDDNTKN ETESKCYDRR RNELLGNISD DGEMDDWFVS KQDRST

Arabidopsis Description

Ran BP2/NZF zinc finger-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I6V2]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.