Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| mitochondrion:
27297264
plasma membrane: 27341663 mitochondrion: 29575040 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID:
29575040
doi
Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93589 | Sorghum | mitochondrion, plastid | 73.84 | 68.53 |
| Os03t0708900-01 | Rice | nucleus | 52.13 | 53.37 |
| HORVU4Hr1G007170.4 | Barley | cytosol, nucleus | 47.09 | 48.99 |
| TraesCS4B01G044200.1 | Wheat | plastid | 50.97 | 45.42 |
| TraesCS4A01G269900.1 | Wheat | plastid | 50.58 | 45.08 |
| TraesCS4D01G041700.1 | Wheat | mitochondrion, plastid | 50.0 | 44.64 |
| GSMUA_Achr6P24110_001 | Banana | plastid | 36.05 | 43.66 |
| Solyc03g118680.2.1 | Tomato | plastid | 30.04 | 38.08 |
| VIT_17s0000g02310.t01 | Wine grape | mitochondrion, plastid | 30.23 | 38.05 |
| PGSC0003DMT400014472 | Potato | plastid | 29.84 | 37.84 |
| CDY40590 | Canola | plastid | 28.1 | 35.02 |
| Bra018736.1-P | Field mustard | plastid | 27.71 | 34.29 |
| CDX93678 | Canola | plastid | 27.33 | 33.81 |
| KRH39085 | Soybean | plastid | 28.1 | 31.66 |
| KRH48632 | Soybean | mitochondrion, plastid | 28.29 | 31.6 |
| AT1G48570.1 | Thale cress | plastid | 26.36 | 29.89 |
| Zm00001d013432_P001 | Maize | mitochondrion | 26.16 | 25.62 |
| Zm00001d012529_P001 | Maize | plastid | 20.16 | 11.52 |
| Zm00001d043095_P004 | Maize | mitochondrion | 19.57 | 10.51 |
Protein Annotations
| EntrezGene:100276543 | MapMan:16.12.5.3 | Gene3D:4.10.1060.10 | ProteinID:AQK63557.1 | UniProt:B6TDT5 | EMBL:EU963150 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR001876 | PFAM:PF00641 | ScanProsite:PS01358 |
| PFscan:PS50199 | PANTHER:PTHR23111 | PANTHER:PTHR23111:SF40 | SMART:SM00547 | SUPFAM:SSF90209 | UniParc:UPI000182C539 |
| EnsemblPlantsGene:Zm00001d013449 | EnsemblPlants:Zm00001d013449_P001 | EnsemblPlants:Zm00001d013449_T001 | InterPro:Znf_RanBP2 | InterPro:Znf_RanBP2_sf | SEG:seg |
Description
zinc finger (Ran-binding) family protein
Coordinates
chr5:-:11834942..11838699
Molecular Weight (calculated)
57508.5 Da
IEP (calculated)
8.331
GRAVY (calculated)
-0.685
Length
516 amino acids
Sequence
(BLAST)
(BLAST)
001: MAACSSRLLY LTLSSSFLRS CRLASSSLLP TASRCHPGSL HSLRFCSAVP EFVDVAADPA EAAVSSGHPW PEWGNFLDKL RAKGYFEQGL PSSVSSGEGA
101: AGDGDPATAS ENAATAASGN TVVDAEDSAV TSEDIYHFLK DENRVKNACL KFGRDRFDLL SLLPKQDIQA IVMSGCPNNN RKPVYSAKRL REYVQVKEED
201: ACSICKFKAS CDRAYVTPKG EVEVRTVDVV RILLSYAMDK NHSGDNSVIE ESVQESAKKL LSKLTEFSDT TIDPSLPKPA FQVARKAQGS VGKGRETTAV
301: EMKKGDWLCT NCNFLNFARN RHCLECKADG PKKIEAAVDA MKMGDWICTQ CQFMNFSRNK ICFKCEEPHP KRQLNPGEWE CPSCDFVNFR RNAICKKCNQ
401: DRPEDDTRDS QRGLRKTRGA GKFRRFDYID QKSDDDDDNA WFQKRGASMR SKPDQRTTTA KSRGSDGLDD ILVTTKRRST KQDEDDEVLP YEGARKHVVS
501: RRATPSQRRF TAARNQ
101: AGDGDPATAS ENAATAASGN TVVDAEDSAV TSEDIYHFLK DENRVKNACL KFGRDRFDLL SLLPKQDIQA IVMSGCPNNN RKPVYSAKRL REYVQVKEED
201: ACSICKFKAS CDRAYVTPKG EVEVRTVDVV RILLSYAMDK NHSGDNSVIE ESVQESAKKL LSKLTEFSDT TIDPSLPKPA FQVARKAQGS VGKGRETTAV
301: EMKKGDWLCT NCNFLNFARN RHCLECKADG PKKIEAAVDA MKMGDWICTQ CQFMNFSRNK ICFKCEEPHP KRQLNPGEWE CPSCDFVNFR RNAICKKCNQ
401: DRPEDDTRDS QRGLRKTRGA GKFRRFDYID QKSDDDDDNA WFQKRGASMR SKPDQRTTTA KSRGSDGLDD ILVTTKRRST KQDEDDEVLP YEGARKHVVS
501: RRATPSQRRF TAARNQ
001: MLRFFKTDHR LFHRIIGYTR PFHGLAKTQN AEIARPGLVD PSSHPWPEWL DLMGMLAKKG YFEESLIPLM SSKESNHIRT ACLNFARHRF TLVRNLSKKD
101: IKVIAGCGCP STDRKVVNSG KRLRAYVGID EGNVCGSCNL RGKCERAYAQ ARDDEGARTI DVMRLLLTYG LDSISPTVEN RACQTKLVED SVRKLLRESV
201: AYSLTDFESA ETETAGDELQ PNSQDIDERD PRKRPGDWYC TECKFLNFAK NIRCLRCDVF SEERLKQLKE EQKDHLPLKK GDWICQTCNF LNFSKNTRCL
301: RCKDKPTLRQ INPGEWECES CNYINFRRNS ICLKCDHKRQ KAANVTPDSK TVADRQSGVT KTWSFVEEES VKRCNGEEEE EEDGFMGFPV EGGRSNVSKS
401: AEKREQWKLE MTQRIRSNGT KAKKDDNTKN ETESKCYDRR RNELLGNISD DGEMDDWFVS KQDRST
101: IKVIAGCGCP STDRKVVNSG KRLRAYVGID EGNVCGSCNL RGKCERAYAQ ARDDEGARTI DVMRLLLTYG LDSISPTVEN RACQTKLVED SVRKLLRESV
201: AYSLTDFESA ETETAGDELQ PNSQDIDERD PRKRPGDWYC TECKFLNFAK NIRCLRCDVF SEERLKQLKE EQKDHLPLKK GDWICQTCNF LNFSKNTRCL
301: RCKDKPTLRQ INPGEWECES CNYINFRRNS ICLKCDHKRQ KAANVTPDSK TVADRQSGVT KTWSFVEEES VKRCNGEEEE EEDGFMGFPV EGGRSNVSKS
401: AEKREQWKLE MTQRIRSNGT KAKKDDNTKN ETESKCYDRR RNELLGNISD DGEMDDWFVS KQDRST
Arabidopsis Description
Ran BP2/NZF zinc finger-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I6V2]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.