Factsheet for GSMUA_Achr6P24110_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014472	Potato	plastid	42.96	44.96
Solyc03g118680.2.1	Tomato	plastid	42.25	44.23
VIT_17s0000g02310.t01	Wine grape	mitochondrion, plastid	40.85	42.44
Os03t0708900-01	Rice	nucleus	48.36	40.87
HORVU4Hr1G007170.4	Barley	cytosol, nucleus	45.07	38.71
Bra018736.1-P	Field mustard	plastid	36.38	37.17
CDX93678	Canola	plastid	36.15	36.93
CDY40590	Canola	plastid	35.21	36.23
Zm00001d013449_P001	Maize	mitochondrion	43.66	36.05
KRH39085	Soybean	plastid	38.5	35.81
TraesCS4A01G269900.1	Wheat	plastid	48.36	35.58
TraesCS4D01G041700.1	Wheat	mitochondrion, plastid	48.12	35.47
TraesCS4B01G044200.1	Wheat	plastid	48.12	35.41
KRH48632	Soybean	mitochondrion, plastid	37.79	34.85
EER93589	Sorghum	mitochondrion, plastid	45.31	34.71
AT1G48570.1	Thale cress	plastid	34.74	32.53
GSMUA_AchrUn_...	Banana	nucleus	25.59	28.09
GSMUA_Achr11P...	Banana	mitochondrion	28.4	15.49
GSMUA_Achr7P02560_001	Banana	plastid, vacuole	23.0	13.63
GSMUA_Achr7P21740_001	Banana	nucleus	22.77	8.63

Protein Annotations

EnsemblPlants:GSMUA_Achr6P24110_001	EnsemblPlants:GSMUA_Achr6T24110_001	EnsemblPlantsGene:GSMUA_Achr6G24110_001	Gene3D:4.10.1060.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001876	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	PANTHER:PTHR23111	PANTHER:PTHR23111:SF40
PFAM:PF00641	PFscan:PS50199	ScanProsite:PS01358	SEG:seg	SMART:SM00547	SUPFAM:SSF90209
UniParc:UPI000295F8AA	UniProt:M0T9Q9	MapMan:16.12.5.3	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G24110_001]

Coordinates

chr6:-:24486378..24491825

Molecular Weight (calculated)

47526.7 Da

IEP (calculated)

8.722

GRAVY (calculated)

-0.529

Length

426 amino acids

Sequence
(BLAST)

001: MMAPASRLLH LSSSPLIRSC RFGARSISPS LLLPSPYYHR RFPFFLPLAQ PPSLRSHATC SAAAIAADGP VASVDEPPAS SHPWPEWDRF LDKLRGKGYF
101: AVPTSTIPAG SVEGEGASVS SEHDDASVEL NRVKNACLKF SRERFDIFSS LPREDIQAVV EYGCPNVFRK AVNSAKRLRA YLQLDEGDVC GACNLRGACD
201: KAYIIPKEDE GPRTVDIMRI LLSYAVNLKQ LSGGANSAVK EQVQKSARNL LSELIKLSDT IIDPTVPGPV MKSPSPKEPS QKVRSGKDSR ASNVEMKRGD
301: WLCPNCNFLN FARNLRCLEC KEDGPKKVHL GSAEMKVGDW TCPECEFMNF ARNRECFRCQ GARPKRVLNP GEWECPLCYY LNFRRNRVCK KCDGDRPVDE
401: GNQLEDHSWR SPKDSKKNNP IKFGDR

Best Arabidopsis Sequence Match ( AT1G48570.1 )
(BLAST)

001: MSSSRIFLVG NSIFRPHKPS FPLSFNRFPS VSLRFRCFSS DAAAAVATTV DSDSPSLTPH PWPEWITFVD RLKTKGYFTK DTEDDTVYQE MILVKDACLS
101: FARDRYDVLR SLSSGDVQAL VERGCPNLFR KTVNSSKRIR AHVKLNEGDV CGSCDLRSSC DRAYVILKDT EADARTVDVM RLLLFNALDS IVISRGEVPP
201: GKELVHESAR RLLLELVEFS EKPLIPALPK PSSKESSLPS KERAFKSRND EPSQRVAFKS RNDDPSQRVA FKSRNDEPSH RVAFKSRNDE SSQRDRPLYS
301: ADWACPKCDF VNFARNERCR ECNEVADRRP VAAVVKEGDW LCPECSFLNF TRNQSCLKCK AKGPKKTSMV NIVEMKKGDW NCTGCGYMNF ASNKQCRECR
401: EQRHKTLAEP GDWECPSCDF VNFRRNDACK KCECKRPSQA NNDQEDHTWK RPALV

Arabidopsis Description

T1N15.19 [Source:UniProtKB/TrEMBL;Acc:Q9LP67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.