Factsheet for HORVU4Hr1G007170.4

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G041700.1	Wheat	mitochondrion, plastid	92.34	79.24
TraesCS4A01G269900.1	Wheat	plastid	92.14	78.93
TraesCS4B01G044200.1	Wheat	plastid	91.94	78.76
Os03t0708900-01	Rice	nucleus	55.44	54.56
Zm00001d013449_P001	Maize	mitochondrion	48.99	47.09
EER93589	Sorghum	mitochondrion, plastid	52.02	46.4
GSMUA_Achr6P24110_001	Banana	plastid	38.71	45.07
VIT_17s0000g02310.t01	Wine grape	mitochondrion, plastid	32.06	38.78
Solyc03g118680.2.1	Tomato	plastid	30.85	37.59
PGSC0003DMT400014472	Potato	plastid	30.65	37.35
CDY40590	Canola	plastid	28.43	34.06
Bra018736.1-P	Field mustard	plastid	28.02	33.33
CDX93678	Canola	plastid	27.82	33.09
KRH39085	Soybean	plastid	30.24	32.75
KRH48632	Soybean	mitochondrion, plastid	30.04	32.25
AT1G48570.1	Thale cress	plastid	26.41	28.79
HORVU4Hr1G007570.1	Barley	nucleus	15.32	23.38
HORVU3Hr1G080150.3	Barley	mitochondrion, nucleus, plastid	19.56	8.84

Protein Annotations

MapMan:16.12.5.3	Gene3D:4.10.1060.10	UniProt:A0A287N2Y1	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
EnsemblPlantsGene:HORVU4Hr1G007170	EnsemblPlants:HORVU4Hr1G007170.4	InterPro:IPR001876	PFAM:PF00641	ScanProsite:PS01358	PFscan:PS50199
PANTHER:PTHR23111	PANTHER:PTHR23111:SF40	SMART:SM00547	SUPFAM:SSF90209	UniParc:UPI000B462807	InterPro:Znf_RanBP2
InterPro:Znf_RanBP2_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:+:18752744..18759874

Molecular Weight (calculated)

55009.3 Da

IEP (calculated)

8.554

GRAVY (calculated)

-0.853

Length

496 amino acids

Sequence
(BLAST)

001: ARSAVAAVSA GHPWPEWADF LEKLRAKGYF VRPPLASGAP VGEEVAADAV AKADYPFRDQ NRVKNACLKF ARERFDLLSS LAKKDIQAIV ECGCPDIFRK
101: AVSSAKRLRE FVQVDEGDAC SVCKLRGSCD KAYVIPKAEE AARTVDVVRI LLTYAIDPAN LSGENSVGGG VQESARKLLS DLTMLCDTTI DPSLPKPEVH
201: TYSKQDSSTK PDKGKQSSRV STGKGRDTAV TEMKKGDWLC PNCNFLNFAR NRQCLECKVD GPKKIEAATS EMKMGDWICP GCAFMNFSRN KMCFKCEGQR
301: PKRQLNPGEW ECPSCDFVNF RRNQECKKCS HDRPEDDTQD NKLGYDVWRN SKGANKDRSF DSVHQGDDDG DEEGLPYKGE ERGHVASRRA SPARREFAGK
401: SRNHGGEDNA LPYEGGDMRV SSRRASPARK GYTKNDDDDE DVKFDVAPYD GAREHGSSRR AAPGRRGFAK DEGARKHVVS RRATPPQRRF TAARGE

Best Arabidopsis Sequence Match ( AT1G48570.1 )
(BLAST)

001: MSSSRIFLVG NSIFRPHKPS FPLSFNRFPS VSLRFRCFSS DAAAAVATTV DSDSPSLTPH PWPEWITFVD RLKTKGYFTK DTEDDTVYQE MILVKDACLS
101: FARDRYDVLR SLSSGDVQAL VERGCPNLFR KTVNSSKRIR AHVKLNEGDV CGSCDLRSSC DRAYVILKDT EADARTVDVM RLLLFNALDS IVISRGEVPP
201: GKELVHESAR RLLLELVEFS EKPLIPALPK PSSKESSLPS KERAFKSRND EPSQRVAFKS RNDDPSQRVA FKSRNDEPSH RVAFKSRNDE SSQRDRPLYS
301: ADWACPKCDF VNFARNERCR ECNEVADRRP VAAVVKEGDW LCPECSFLNF TRNQSCLKCK AKGPKKTSMV NIVEMKKGDW NCTGCGYMNF ASNKQCRECR
401: EQRHKTLAEP GDWECPSCDF VNFRRNDACK KCECKRPSQA NNDQEDHTWK RPALV

Arabidopsis Description

T1N15.19 [Source:UniProtKB/TrEMBL;Acc:Q9LP67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.