Factsheet for HORVU3Hr1G080150.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

plastid 4
mitochondrion 3
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G027080.4
HORVU5Hr1G075110.3
HORVU6Hr1G062870.1
HORVU6Hr1G068720.1
HORVU6Hr1G069310.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17790.1	HORVU5Hr1G075110.3	AT1G51580.1	21798944
AT5G17790.1	HORVU6Hr1G069310.1	AT3G27960.1	21798944
AT5G17790.1	HORVU0Hr1G027080.4	AT3G48150.1	21798944
AT5G17790.1	HORVU6Hr1G062870.1	AT3G48150.1	21798944
AT5G17790.1	HORVU6Hr1G068720.1	AT4G19170.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G339100.1	Wheat	nucleus	79.22	78.79
TraesCS3B01G370800.2	Wheat	plastid	78.49	78.49
TraesCS3D01G332700.1	Wheat	plastid	75.93	75.45
EES01648	Sorghum	plastid	46.67	56.95
Os01t0815700-01	Rice	plastid	48.22	55.68
Zm00001d012529_P001	Maize	plastid	44.67	54.26
Zm00001d043095_P004	Maize	mitochondrion	47.31	54.01
CDX70775	Canola	plastid	26.25	41.68
CDX78760	Canola	plastid, vacuole	26.44	41.37
CDY38459	Canola	plastid	26.53	40.64
KRG94930	Soybean	mitochondrion, plastid, vacuole	30.81	40.58
Bra006420.1-P	Field mustard	plastid, vacuole	26.44	40.5
KRH64967	Soybean	plastid	30.17	40.32
VIT_08s0056g01170.t01	Wine grape	endoplasmic reticulum, plastid	32.27	40.27
Bra002106.1-P	Field mustard	plastid	26.16	40.08
CDY16887	Canola	plastid	26.07	39.89
AT5G17790.1	Thale cress	plastid	26.07	37.73
PGSC0003DMT400028376	Potato	plastid	29.35	37.05
Solyc01g057780.2.1	Tomato	mitochondrion, plastid	28.9	36.27
GSMUA_Achr7P21740_001	Banana	nucleus	33.0	32.21
GSMUA_Achr7P02560_001	Banana	plastid, vacuole	19.33	29.49
HORVU4Hr1G007170.4	Barley	cytosol, nucleus	8.84	19.56
HORVU4Hr1G007570.1	Barley	nucleus	5.01	16.92

Protein Annotations

EnsemblPlants:HORVU3Hr1G080150.3	EnsemblPlantsGene:HORVU3Hr1G080150	Gene3D:4.10.1060.10	InterPro:IPR001876	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf
PANTHER:PTHR23111	PANTHER:PTHR23111:SF30	PFAM:PF00641	PFscan:PS50199	ScanProsite:PS01358	SEG:seg
SMART:SM00547	SUPFAM:SSF90209	UniParc:UPI00029539DC	UniProt:M0Z7W5	MapMan:16.12.5.3	:

Description

No Description!

Coordinates

chrchr3H:-:587011592..587017129

Molecular Weight (calculated)

119350.0 Da

IEP (calculated)

7.890

GRAVY (calculated)

-0.881

Length

1097 amino acids

Sequence
(BLAST)

0001: MPRYFLYSAV RLNPPDHPLG RQFGSSRAKA YRRRRTLSRS RLSAVAMGSA SKLLSSLLLT SSPLRLRPSA AAFALILSSR TAASRRQHLL SSPSPLRTLS
0101: TSAAAAAASP LPYSSSSASS TPPPHVPFPD WSRLVDRLAA AGYAARAPSP ADELAVPSGS GLSAEAESAV SSCLAFARDR PDLLRSLPTK DVEVVVSNVA
0201: PALFKRGEES AQRLQQYLAG EDDNAIQSVR AETVDIVRYL LSYTYGSSNN YLEDKELTDS AVRNILAELV NFSGLPHTSS FVESTVDNQP ERFSRHPGQN
0301: VEMKRGDWIC TRCSFMNFAR NARCLECNEH RPKKMLTGGE WECPQCEFYN YGRNMSCLRC ACKRPATTAS AGAGLGGVAD LLSVTNAGRS DIERKLAEND
0401: EKAERWLSKV SQLDDSADLS SLAADEDFPE IMPMRKGVNK FVVSTRKTPL ERRLSSAQYS SNNSPQATAS DSKISQTLDR ILGRSASTSA PSNQSDNGGV
0501: DAGPPRKLTG HLGDIDPVPF VPLSADLFTK PQNANSNEQA DTDCQINKET GSSTPDTTQA STGRRDVDKS LDTAEKWSKK VAELDSVNDL SSAISDEDFP
0601: DIMPMRKGEN RFVISKKKDR SLASPQYKRR SVLEQADNSD FVPFVPFPPD YFAKKDAPAE STPDTGTVSE SPPSADKLPE TNASPGNSGN SQNTSQVIGP
0701: QRSSNMTNEN WNRNYSQQSS STGGYTQGGS SSQQYQQQPY DVGDRSSRTS NTSAWNPNYS QGTFNDGRGG SSNYQHQQQP QELGDQSIRT SNTGALNTNY
0801: SQGRFNDGRG GSSNYQHQQQ PREMGDRSSG ISNTGAWNTN HSQDSFNDGR GGSSNYQQQQ QLHGMGDQSS GTSNTGAWNT NYPQGRFNDG RGGSSNYQYQ
0901: QQPHQTGGRP SGTLDTHAPN SNYSQGSFNE GRDTSTYNHG SYSTQPSYAP GYSNNSNSNA WSSNNNQNWS GSHPDTRATT TGIGSTNPNQ ATGYSSYGSG
1001: GYTGKSLEGS AVKDPDPLDM SEEAKAERWF RRAAQIKDIS ELANIPDEDF PEIMPMRKGV NRFVVSKRKT PLERRLTSPQ YRRNLPIVSS EPDKDGS

Best Arabidopsis Sequence Match ( AT5G17790.1 )
(BLAST)

001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK

Arabidopsis Description

VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.