CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76489
CDX78923
CDX86457
CDX99397
CDY08148
CDY36901
CDY44976
CDY46555
CDY52947
CDY58069
CDY58070
CDY58518
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17790.1	CDY46555	AT1G51580.1	21798944
AT5G17790.1	CDY52947	AT1G51580.1	21798944
AT5G17790.1	CDX86457	AT3G27960.1	21798944
AT5G17790.1	CDY58518	AT3G27960.1	21798944
AT5G17790.1	CDY36901	AT3G48150.1	21798944
AT5G17790.1	CDY44976	AT3G48150.1	21798944
AT5G17790.1	CDY58069	AT3G48150.1	21798944
AT5G17790.1	CDY58070	AT3G48150.1	21798944
AT5G17790.1	CDY70805	AT3G48150.1	21798944
AT5G17790.1	CDY08148	AT3G49580.1	21798944
AT5G17790.1	CDX76489	AT4G19170.1	15340011
AT5G17790.1	CDX78923	AT4G19170.1	15340011
AT5G17790.1	CDX99397	AT4G19170.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38459	Canola	plastid	82.57	82.68
CDX70775	Canola	plastid	64.44	66.86
CDX78760	Canola	plastid, vacuole	64.3	65.76
AT5G17790.1	Thale cress	plastid	58.58	55.41
KRH64967	Soybean	plastid	41.7	36.42
VIT_08s0056g01170.t01	Wine grape	endoplasmic reticulum, plastid	44.63	36.41
KRG94930	Soybean	mitochondrion, plastid, vacuole	41.42	35.65
PGSC0003DMT400028376	Potato	plastid	40.17	33.14
Solyc01g057780.2.1	Tomato	mitochondrion, plastid	40.17	32.95
EES01648	Sorghum	plastid	40.03	31.92
Zm00001d012529_P001	Maize	plastid	39.61	31.45
Os01t0815700-01	Rice	plastid	40.59	30.63
Zm00001d043095_P004	Maize	mitochondrion	38.21	28.51
TraesCS3B01G370800.2	Wheat	plastid	40.17	26.25
HORVU3Hr1G080150.3	Barley	mitochondrion, nucleus, plastid	39.89	26.07
TraesCS3D01G332700.1	Wheat	plastid	40.03	26.0
TraesCS3A01G339100.1	Wheat	nucleus	39.47	25.66
GSMUA_Achr7P21740_001	Banana	nucleus	39.61	25.27
GSMUA_Achr7P02560_001	Banana	plastid, vacuole	22.87	22.81
CDY40590	Canola	plastid	12.69	21.98
CDX93678	Canola	plastid	12.69	21.82
CDY11563	Canola	mitochondrion	11.86	18.44
CDX96267	Canola	mitochondrion	11.86	18.28
CDY41729	Canola	nucleus	15.9	13.77
CDY53578	Canola	nucleus	15.76	13.6

Protein Annotations

EnsemblPlants:CDY16887	EnsemblPlantsGene:GSBRNA2T00094788001	Gene3D:4.10.1060.10	GO:A0A078FVT6	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001876	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	PANTHER:PTHR23111	PANTHER:PTHR23111:SF30
PFAM:PF00641	PFscan:PS50199	ProteinID:CDY16887	ProteinID:CDY16887.1	ScanProsite:PS01358	SEG:seg
SMART:SM00547	SUPFAM:SSF90209	UniParc:UPI0004EDE88E	UniProt:A0A078FVT6	MapMan:16.12.5.3	:

Description

BnaC09g40140DBnaC09g40140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVT6]

Coordinates

chrLK032068:+:110363..112927

Molecular Weight (calculated)

80929.8 Da

IEP (calculated)

8.409

GRAVY (calculated)

-0.689

Length

717 amino acids

Sequence
(BLAST)

001: MNNSTRILSL FSPPPPILRG LFISRLTNLR CLHRLASAPS SVDSSHRRCP LSFPPLISTI PIARFHTHRV RVSASDSVPS YHHQLPEWAE LIKSLSKAGY
101: FTDSAPSSGF ENEFFPGLPE EFLLRPVIAC LALARDRPEL LEMVSRRDVQ VVVENVKPFL FRTGPDSLKR MSLYLTSGRQ GIGKVVDMDK ASTLDLMRLI
201: LSYVVDFASS EGIKHHDREI MESSVRNLLS EIAKMSFRTP ESNGAMQNKF SERNGGSFQK NVEMKRGDWI CSRCSGMNFA RNVKCFQCDE ARPKRQLTGS
301: EWECPQCDFY NYGRNIACLR CDCKRPRDFS LNSANSGSAH SKDPELERRL VENEEKAQRW FSKLAQGGGS DANSVDTDED FPEIMPLRKG VNRYVVNTRK
401: TPLERRLANT ETDGTKTNRS LNEILGSSSS SASSKRFESS QVVNSDFVPF VPLPSDMFAK KHDKEDKQIG LTAKNKMNGV SEDNGDVYKE DKSSASVFGE
501: ERDEKESDWL KKMTELHKVS DLESAIPEEI SPEKMPLSRK KDRSVTSPSN KRRISIETKD SDFVPFVPFP PDYFAKHKQP EETTTTTDTI SAPVAKNPSQ
601: VVVQKEPSSS IPEPMAEKIR NGNSLEGSLV KEPDLLDMSE EAKAERWFKR VAEIKNISEL SQIPDEDFPS IMPMRKGVNR FVVSKRKTPL ERRLASQRQQ
701: RDPPPITDSD PASNRDT

Best Arabidopsis Sequence Match ( AT5G17790.1 )
(BLAST)

001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK

Arabidopsis Description

VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.