Factsheet for TraesCS3A01G339100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G276800.5
TraesCS5B01G276400.1
TraesCS5D01G284200.4
TraesCS6A01G251400.1
TraesCS6A01G271600.1
TraesCS6A01G274500.1
TraesCS6B01G273900.1
TraesCS6B01G298800.1
TraesCS6B01G302000.1
TraesCS6D01G233200.1
TraesCS6D01G251800.1
TraesCS6D01G254800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17790.1	TraesCS5A01G276800.5	AT1G51580.1	21798944
AT5G17790.1	TraesCS5B01G276400.1	AT1G51580.1	21798944
AT5G17790.1	TraesCS5D01G284200.4	AT1G51580.1	21798944
AT5G17790.1	TraesCS6A01G274500.1	AT3G27960.1	21798944
AT5G17790.1	TraesCS6B01G302000.1	AT3G27960.1	21798944
AT5G17790.1	TraesCS6D01G254800.1	AT3G27960.1	21798944
AT5G17790.1	TraesCS6A01G251400.1	AT3G48150.1	21798944
AT5G17790.1	TraesCS6B01G273900.1	AT3G48150.1	21798944
AT5G17790.1	TraesCS6D01G233200.1	AT3G48150.1	21798944
AT5G17790.1	TraesCS6A01G271600.1	AT4G19170.1	15340011
AT5G17790.1	TraesCS6B01G298800.1	AT4G19170.1	15340011
AT5G17790.1	TraesCS6D01G251800.1	AT4G19170.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G370800.2	Wheat	plastid	85.04	85.51
TraesCS3D01G332700.1	Wheat	plastid	81.87	81.79
HORVU3Hr1G080150.3	Barley	mitochondrion, nucleus, plastid	78.79	79.22
EES01648	Sorghum	plastid	48.05	58.95
Os01t0815700-01	Rice	plastid	49.05	56.95
Zm00001d043095_P004	Maize	mitochondrion	48.5	55.67
Zm00001d012529_P001	Maize	plastid	43.61	53.27
CDX70775	Canola	plastid	26.84	42.84
CDX78760	Canola	plastid, vacuole	26.65	41.94
CDY38459	Canola	plastid	26.65	41.06
Bra006420.1-P	Field mustard	plastid, vacuole	26.47	40.78
VIT_08s0056g01170.t01	Wine grape	endoplasmic reticulum, plastid	32.37	40.61
Bra002106.1-P	Field mustard	plastid	26.29	40.5
KRG94930	Soybean	mitochondrion, plastid, vacuole	30.1	39.86
KRH64967	Soybean	plastid	29.65	39.83
CDY16887	Canola	plastid	25.66	39.47
PGSC0003DMT400028376	Potato	plastid	30.55	38.78
Solyc01g057780.2.1	Tomato	mitochondrion, plastid	30.37	38.33
AT5G17790.1	Thale cress	plastid	25.29	36.81
GSMUA_Achr7P21740_001	Banana	nucleus	31.82	31.23
GSMUA_Achr7P02560_001	Banana	plastid, vacuole	19.13	29.35
TraesCS4A01G269900.1	Wheat	plastid	9.34	17.79
TraesCS4A01G267600.1	Wheat	mitochondrion	8.07	16.89
TraesCS6A01G359500.1	Wheat	mitochondrion	10.79	14.58

Protein Annotations

EnsemblPlants:TraesCS3A01G339100.1	EnsemblPlantsGene:TraesCS3A01G339100	Gene3D:4.10.1060.10	InterPro:IPR001876	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf
ncoils:Coil	PANTHER:PTHR23111	PANTHER:PTHR23111:SF30	PFAM:PF00641	PFscan:PS50199	ScanProsite:PS01358
SEG:seg	SMART:SM00547	SUPFAM:SSF90209	MapMan:16.12.5.3	:	:

Description

No Description!

Coordinates

chr3A:+:586404608..586409754

Molecular Weight (calculated)

119758.0 Da

IEP (calculated)

8.188

GRAVY (calculated)

-0.866

Length

1103 amino acids

Sequence
(BLAST)

0001: MPRYFFHSAV RLNPTIRWAA NLGSSRQRPT GRRRRTLSSS RSRLSAVAAV AMGSASKLLS SLLLTSSPLR LRPSAAAFAL ILSSRTAASR RQHLLSSPSP
0101: LRTLSTSAAA AASPLPYSSS SASSAPPLHA PFPEWSRLVD RLAAAGYAAR APSPADELAV ASGSGLSAEA ESAVSSCLAF ARDRPDLLRS LPTMDVEVVV
0201: SNVAPALFKG GEESAQRLQQ YLAGEEDNAI QSGRAETVDI VRYLLSYTYS SSNNYLEDKE LTDSAVRNIL AELVNSSGLA HTSSFVESTV ESQPERFSRH
0301: PGQNVEMKRG DWICTRCSFM NFARNARCLE CNEHRPKKML TGGEWECPQC EFYNYGRNMS CLRCACKRPA TTASAGTGLG GVAELLSGTN AGRSEIERKL
0401: AESDEKAERW LSKVSQLDDS ADLSSLATDE DFPEIMPMRK GVNKFVVSTR KTPLERRLAS AQYSSNNSPQ ATASDSKISQ TLDRILGRSA STSAPNNQSD
0501: NGGVNAETPR KLTGHLGDID PVPFVPLSAD LFTKPQNAKS NEQADRDCQI NKETGSSTPD IPQASTERKD VDKSLDTAEK WSKKVAELDS VNDLSSAISD
0601: EDFPDIMPMR KGENRFVISK KKDRSLTSPQ YQRRSVLEQA NNSDFVPFVP FPPDYFAKKD APSESTPDTG IVSESSPSAD KLPETNAPSR HLGNNPNTSQ
0701: VIGPQGSSIT SNENWNRNYS QQSSSPGSYT RGGSSSQQYQ QQPYEMGDRS TGTPNSGAWN PNYSQGTSTD VRGGSSNYQR QQQPHEGGDR SRETSNTGAL
0801: NTNHSPGRFN DVRGGSSNYQ HQQQPHEAGG RSSGTSNTGA WNTNYSQSHG RFNDGRGGSN NYHHQQQPHE VGDRSSGTSN TGAWNTNYSQ SQGRFNDGRG
0901: GSSNYQYQTQ PHQAGGPSSG SSNTLNTNYS QGSFNEGRDT STYNQGSYPT QPSYTPGYSD HSNSNAWSSN NNQNWSGSHP DSRVSTTGIG STNPNQATGY
1001: SSYGGGGYTG KSLEGSAVKD PDPLDMSEEA KAERWFRRAA QIKDISELAN IPDEDFPEIM PMRKGVNRFV VSKRKTPLER RLTSPQYRRN LPVVSSEPDK
1101: DAS

Best Arabidopsis Sequence Match ( AT5G17790.1 )
(BLAST)

001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK

Arabidopsis Description

VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.