Factsheet for Os01t0815700-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 2
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0656300-01
Os02t0704000-01
Os02t0708400-01
Os06t0679100-00
Os09t0498600-01
Os12t0435200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17790.1	Os09t0498600-01	AT1G51580.1	21798944
AT5G17790.1	Os02t0708400-01	AT3G27960.1	21798944
AT5G17790.1	Os02t0656300-01	AT3G48150.1	21798944
AT5G17790.1	Os06t0679100-00	AT3G48150.1	21798944
AT5G17790.1	Os02t0704000-01	AT4G19170.1	15340011
AT5G17790.1	Os12t0435200-01	AT4G19170.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01648	Sorghum	plastid	55.68	58.84
Zm00001d012529_P001	Maize	plastid	51.16	53.82
Zm00001d043095_P004	Maize	mitochondrion	53.89	53.28
TraesCS3D01G332700.1	Wheat	plastid	57.68	49.64
TraesCS3B01G370800.2	Wheat	plastid	57.16	49.5
TraesCS3A01G339100.1	Wheat	nucleus	56.95	49.05
HORVU3Hr1G080150.3	Barley	mitochondrion, nucleus, plastid	55.68	48.22
CDX70775	Canola	plastid	31.16	42.84
CDX78760	Canola	plastid, vacuole	31.37	42.51
CDY38459	Canola	plastid	31.68	42.04
Bra002106.1-P	Field mustard	plastid	31.58	41.9
VIT_08s0056g01170.t01	Wine grape	endoplasmic reticulum, plastid	38.53	41.64
Bra006420.1-P	Field mustard	plastid, vacuole	30.95	41.06
CDY16887	Canola	plastid	30.63	40.59
KRG94930	Soybean	mitochondrion, plastid, vacuole	35.26	40.22
KRH64967	Soybean	plastid	34.53	39.95
AT5G17790.1	Thale cress	plastid	30.63	38.39
PGSC0003DMT400028376	Potato	plastid	33.89	37.05
Solyc01g057780.2.1	Tomato	mitochondrion, plastid	33.26	36.16
GSMUA_Achr7P21740_001	Banana	nucleus	37.47	31.67
GSMUA_Achr7P02560_001	Banana	plastid, vacuole	23.47	31.02
Os03t0708900-01	Rice	nucleus	11.26	21.23
Os07t0404300-01	Rice	nucleus	12.11	17.77
Os03t0712200-01	Rice	mitochondrion	9.16	16.63
Os01t0815800-01	Rice	nucleus	2.0	11.73

Protein Annotations

MapMan:16.12.5.3	Gene3D:4.10.1060.10	EntrezGene:4327482	ProteinID:BAD82701.1	ProteinID:BAF06528.1	ProteinID:BAS74916.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0046872	GO:GO:1900871
InterPro:IPR001876	EnsemblPlantsGene:Os01g0815700	EnsemblPlants:Os01t0815700-01	PFAM:PF00641	ScanProsite:PS01358	PFscan:PS50199
PANTHER:PTHR23111	PANTHER:PTHR23111:SF30	UniProt:Q5N755	SMART:SM00547	SUPFAM:SSF90209	UniParc:UPI000049EAE8
RefSeq:XP_015621599.1	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:

Description

Zinc finger, RanBP2-type domain containing protein. (Os01t0815700-01)

Coordinates

chr1:+:34678036..34682189

Molecular Weight (calculated)

103575.0 Da

IEP (calculated)

7.100

GRAVY (calculated)

-0.828

Length

950 amino acids

Sequence
(BLAST)

001: MGGASKLLSS LLLTSSPLRL RPSAGAFALF LSPPASRRHL LLSSPAPLRT LSTASASAAA GGASSDSYSS GSCHSPFPEW SRLVDRLSAA GYGARAPSPA
101: DELDLDPECG LSSDAEAAVS SFLAFARDRP DLLRSLPRKD VEVLVANAAP ALFKDGEASE LRLRQYLAGE GSDVTQSERA ETIDIVRYLL SYAYGSPVSY
201: LKDKELTDSA VRNILAEFVS FSGFPQTSSY AESTARQNTL GSRPPGQNIE MKRGDWICTR CSFMNFARNA RCLECNEHRP KKMLTGGEWE CPQCVYYNYG
301: RNMSCLRCSC KRPGTIPPNP AGAGLDGVAQ FLNTSIVGKS EIERKLAEND QKAERWLNKV SQLDDSADLS SLAADEDFPE IMPIRKGVNK FVVSTRKTPL
401: ERRLANAQYS SNNSPQDGSS DSKISKTLDR ILGRSTSTSV QNNQSGDGDV NTSSNKTTSN LGGIDPVPFV PLSADQFAKP QNSFGDGQSD TQISTEADSM
501: AKSQMDSMER RDDKRSFDTT EEWSKKVAEL SNVKDFPSAI SDQDFPEIMP MRKGENRFVI SKKKDRSLTS PQYKRRSVLE HADNSNFIPF VPFPPDYFAK
601: KNKPVENSSD AGIVPEGPPS AEKLPETKYS SGNLGNFQNS SQVMGSQAAN NMNNENRNGN YPHQNLSTSG YGYGESITYQ HQPQSQGMVG RSGGASETGT
701: RNANNNQGSF SESRDRSTYN RGSHSAQPPY KSGYGNNNNA WSSNNNGSNN AWSSTRDYDN GGRSDNNPYY NSSTWSSNST YSNNAAWSSN SSYNSNSAWS
801: SNSSYNSNSA WSNNSNNSWS GSYSDNGGTG SGSSASRPNQ TAGYSSYGES ANRGYTGKSL EGSAVKDPDP LDMSEEAKAE RWFRRAAQIK DISELANIPD
901: EDFPEIMPMR KGVNRFVVSK RKTPLERRLT SPQYRRNLPI VSSEPNEDAN

Best Arabidopsis Sequence Match ( AT5G17790.1 )
(BLAST)

001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK

Arabidopsis Description

VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.