Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH64967 | Soybean | plastid | 30.25 | 41.41 |
| Zm00001d012529_P001 | Maize | plastid | 33.19 | 41.31 |
| VIT_08s0056g01170.t01 | Wine grape | endoplasmic reticulum, plastid | 32.3 | 41.3 |
| KRG94930 | Soybean | mitochondrion, plastid, vacuole | 30.07 | 40.58 |
| CDX70775 | Canola | plastid | 24.82 | 40.38 |
| CDY38459 | Canola | plastid | 25.44 | 39.94 |
| Bra002106.1-P | Field mustard | plastid | 25.36 | 39.8 |
| CDY16887 | Canola | plastid | 25.27 | 39.61 |
| CDX78760 | Canola | plastid, vacuole | 24.56 | 39.37 |
| Bra006420.1-P | Field mustard | plastid, vacuole | 25.0 | 39.25 |
| EES01648 | Sorghum | plastid | 31.32 | 39.15 |
| Os01t0815700-01 | Rice | plastid | 31.67 | 37.47 |
| AT5G17790.1 | Thale cress | plastid | 25.09 | 37.2 |
| Solyc01g057780.2.1 | Tomato | mitochondrion, plastid | 28.91 | 37.19 |
| PGSC0003DMT400028376 | Potato | plastid | 28.65 | 37.05 |
| Zm00001d043095_P004 | Maize | mitochondrion | 31.32 | 36.63 |
| GSMUA_Achr7P02560_001 | Banana | plastid, vacuole | 21.44 | 33.52 |
| HORVU3Hr1G080150.3 | Barley | mitochondrion, nucleus, plastid | 32.21 | 33.0 |
| TraesCS3B01G370800.2 | Wheat | plastid | 32.12 | 32.91 |
| TraesCS3A01G339100.1 | Wheat | nucleus | 31.23 | 31.82 |
| TraesCS3D01G332700.1 | Wheat | plastid | 31.14 | 31.7 |
| GSMUA_Achr6P24110_001 | Banana | plastid | 8.63 | 22.77 |
| GSMUA_AchrUn_... | Banana | nucleus | 6.14 | 17.78 |
| GSMUA_Achr11P... | Banana | mitochondrion | 10.05 | 14.47 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.1 | MapMan:16.12.5.3 | Gene3D:4.10.1060.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 |
| EnsemblPlantsGene:GSMUA_Achr7G21740_001 | EnsemblPlants:GSMUA_Achr7P21740_001 | EnsemblPlants:GSMUA_Achr7T21740_001 | InterPro:Homeobox-like_sf | InterPro:IPR001876 | InterPro:IPR017930 |
| UniProt:M0TJL0 | InterPro:Myb_dom | PFAM:PF00249 | PFAM:PF00641 | ScanProsite:PS01358 | PFscan:PS50199 |
| PFscan:PS51294 | PANTHER:PTHR23111 | PANTHER:PTHR23111:SF30 | InterPro:SANT/Myb | SMART:SM00547 | SMART:SM00717 |
| SUPFAM:SSF46689 | SUPFAM:SSF90209 | TMHMM:TMhelix | UniParc:UPI00029547CC | InterPro:Znf_RanBP2 | InterPro:Znf_RanBP2_sf |
| SEG:seg | : | : | : | : | : |
Description
Putative Zinc finger protein VAR3, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr7G21740_001]
Coordinates
chr7:+:24438808..24446703
Molecular Weight (calculated)
126024.0 Da
IEP (calculated)
8.503
GRAVY (calculated)
-0.608
Length
1124 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSGRRDHGQ AKLCVRGHWK PSEDAKLMDL VARYGPQNWN FIADKLNGRS GKSCRLRWFN QLDPKINKTA FSEEEEEKLV ASHRIYGNKW ALMARLFPGR
0101: TDNAVKNQWH VLMARKEREQ GSGCRRRKAL PQRTEVSRGH NNAWSGESSI TSSRDESSST CTGSRAMPCF LKDFGMAQQQ QPLQLCFGSG YSFGNETSEG
0201: SAVDHCSNGF LPSETDGDRK KKCIPFIDFM VYWIWLFSGC YFGSIPHPLI SVRIRIRIRI RYWSSNLSII SDSETGCIWH ILLLKGDLDL DLSHHRSLSS
0301: LVVPKVVTST SVVCRGHPNC YNLHALHKLR REAPPPKTLV LSLSSLSKVF APPPLMGGVA RLLVLLATPF PRPSALRLSR HLAVPLAALS AAASTASSYS
0401: SHHFRPLHPR LRLGFSVVTA ERFHTQLAGA RDDHGEAVAS APTSHAGSMR SWPEWRKLVD YLVAGGYYDR QDSVAVGEED DDSLLAGEDL TEEFVKAAQA
0501: CLSFARDKPD LLRMLAKKDI EIIVENGSPF LFKNGANSVR RLQSFVVADG TKVLESERAQ TVDIMRYLLS YACSSTATRD ESFLTTRDLT ETAIRSLLAQ
0601: LFRLSVTNPE ARLTEMTPRQ TVTKQHFSRP TWQTIEMKRG DWICPKCSFM NFARNMGCLE CNEARPKKIL SDGEWECPQC DFFNFSRNMS CLRCDFKRPG
0701: GSPFGTASSD AHLGYNGSST VEQILKRSNL DKSEIERKLA ANDEKAERWF SKISQLDDSA DLSSAIDDED FPEIMPMRKG MNRFVVSTRK TPLERRLANA
0801: QNRSNLGNSG FSEGHELQPG RSNGMNSHKP SESSISQMTD PDSVPFVPLP ADMFSKNSNP DNKQSLNTED SASPKASQLG DPVFKESESS AESRDSDSFD
0901: ASKGWSKKVT ELDNVRDMAN AISDDDFPEI MPMRKGENRF IVSKKKDRSL TSLQYKRRIA MEQANSGNFV PFVPFPPDYF AKKDKQPETS PTEGSTLHEK
1001: ARSETEKSEE SMTGTENSKS ASEGWKPSFS GKSLEGSAVT EPDPLDMSEE AKAARWFRRA AQIKDISELS NIPDEDFPEI MPMRKGVNRF VVSKRKTPLE
1101: RRLTSPQYRR SLPIVRSEPD EDAN
0101: TDNAVKNQWH VLMARKEREQ GSGCRRRKAL PQRTEVSRGH NNAWSGESSI TSSRDESSST CTGSRAMPCF LKDFGMAQQQ QPLQLCFGSG YSFGNETSEG
0201: SAVDHCSNGF LPSETDGDRK KKCIPFIDFM VYWIWLFSGC YFGSIPHPLI SVRIRIRIRI RYWSSNLSII SDSETGCIWH ILLLKGDLDL DLSHHRSLSS
0301: LVVPKVVTST SVVCRGHPNC YNLHALHKLR REAPPPKTLV LSLSSLSKVF APPPLMGGVA RLLVLLATPF PRPSALRLSR HLAVPLAALS AAASTASSYS
0401: SHHFRPLHPR LRLGFSVVTA ERFHTQLAGA RDDHGEAVAS APTSHAGSMR SWPEWRKLVD YLVAGGYYDR QDSVAVGEED DDSLLAGEDL TEEFVKAAQA
0501: CLSFARDKPD LLRMLAKKDI EIIVENGSPF LFKNGANSVR RLQSFVVADG TKVLESERAQ TVDIMRYLLS YACSSTATRD ESFLTTRDLT ETAIRSLLAQ
0601: LFRLSVTNPE ARLTEMTPRQ TVTKQHFSRP TWQTIEMKRG DWICPKCSFM NFARNMGCLE CNEARPKKIL SDGEWECPQC DFFNFSRNMS CLRCDFKRPG
0701: GSPFGTASSD AHLGYNGSST VEQILKRSNL DKSEIERKLA ANDEKAERWF SKISQLDDSA DLSSAIDDED FPEIMPMRKG MNRFVVSTRK TPLERRLANA
0801: QNRSNLGNSG FSEGHELQPG RSNGMNSHKP SESSISQMTD PDSVPFVPLP ADMFSKNSNP DNKQSLNTED SASPKASQLG DPVFKESESS AESRDSDSFD
0901: ASKGWSKKVT ELDNVRDMAN AISDDDFPEI MPMRKGENRF IVSKKKDRSL TSLQYKRRIA MEQANSGNFV PFVPFPPDYF AKKDKQPETS PTEGSTLHEK
1001: ARSETEKSEE SMTGTENSKS ASEGWKPSFS GKSLEGSAVT EPDPLDMSEE AKAARWFRRA AQIKDISELS NIPDEDFPEI MPMRKGVNRF VVSKRKTPLE
1101: RRLTSPQYRR SLPIVRSEPD EDAN
001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK
Arabidopsis Description
VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.