Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G339100.1 | Wheat | nucleus | 85.51 | 85.04 |
| TraesCS3D01G332700.1 | Wheat | plastid | 79.31 | 78.8 |
| HORVU3Hr1G080150.3 | Barley | mitochondrion, nucleus, plastid | 78.49 | 78.49 |
| EES01648 | Sorghum | plastid | 48.4 | 59.07 |
| Os01t0815700-01 | Rice | plastid | 49.5 | 57.16 |
| Zm00001d012529_P001 | Maize | plastid | 46.4 | 56.37 |
| Zm00001d043095_P004 | Maize | mitochondrion | 45.49 | 51.93 |
| CDX70775 | Canola | plastid | 26.62 | 42.26 |
| CDX78760 | Canola | plastid, vacuole | 26.89 | 42.08 |
| CDY38459 | Canola | plastid | 26.98 | 41.34 |
| Bra002106.1-P | Field mustard | plastid | 26.89 | 41.2 |
| KRG94930 | Soybean | mitochondrion, plastid, vacuole | 31.08 | 40.94 |
| Bra006420.1-P | Field mustard | plastid, vacuole | 26.62 | 40.78 |
| KRH64967 | Soybean | plastid | 30.17 | 40.32 |
| CDY16887 | Canola | plastid | 26.25 | 40.17 |
| VIT_08s0056g01170.t01 | Wine grape | endoplasmic reticulum, plastid | 31.91 | 39.82 |
| AT5G17790.1 | Thale cress | plastid | 25.98 | 37.6 |
| PGSC0003DMT400028376 | Potato | plastid | 29.44 | 37.17 |
| Solyc01g057780.2.1 | Tomato | mitochondrion, plastid | 28.99 | 36.38 |
| GSMUA_Achr7P21740_001 | Banana | nucleus | 32.91 | 32.12 |
| GSMUA_Achr7P02560_001 | Banana | plastid, vacuole | 19.87 | 30.32 |
| TraesCS4B01G044200.1 | Wheat | plastid | 9.39 | 17.79 |
| TraesCS4B01G046800.1 | Wheat | mitochondrion | 8.02 | 16.64 |
| TraesCS6B01G392400.1 | Wheat | mitochondrion | 10.67 | 14.25 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G370800.2 | EnsemblPlantsGene:TraesCS3B01G370800 | Gene3D:4.10.1060.10 | InterPro:IPR001876 | InterPro:Znf_RanBP2 | InterPro:Znf_RanBP2_sf |
| ncoils:Coil | PANTHER:PTHR23111 | PANTHER:PTHR23111:SF30 | PFAM:PF00641 | PFscan:PS50199 | ScanProsite:PS01358 |
| SEG:seg | SMART:SM00547 | SUPFAM:SSF90209 | MapMan:16.12.5.3 | : | : |
Description
No Description!
Coordinates
chr3B:+:583373366..583379558
Molecular Weight (calculated)
118494.0 Da
IEP (calculated)
6.946
GRAVY (calculated)
-0.897
Length
1097 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGSASKLLSS LLLTSSPLRL RPSAAAFALI LSSRTAASRQ QHLPSSPSPL RTLSTSGAAA ASPLPYSSSS SSASSTPPLH APFPEWSRLV DRLAAAGYAA
0101: RAPSPADELA VASGSGLSAE AESAVSSCLA FARDRPDLLR SLPTKDVEVV VSNVAPALFK GGEESAQRLQ QYLAGEEDNA IQSVRAVTVD IVRYLLSYTY
0201: SSSNNYLEDK ELTDSAVRNI LAELVNSSGL PHTSSFVEST VESQPERFSR HPGQNVEMKR GDWICTRCSF MNFARNARCL ECNEHRPKKM LTGREWECPQ
0301: CEFYNYGRNM SCLRCACKRP ATTASAGAGL GGVAELLNVT NAGRSEIERK LAQSDEKAER WLSKVSQLDD SADLSSLAAD EDFPEIMPMR KGVNKFVVST
0401: RKTPLERRLA SAQYSSNNSP QATASGSKIS QTLDRILGRS ASTSAPNNQS DNGGVTAETP RKLTGHLGDI DPVPFVPLSA DLFTKPQNAK TNEQADRDSQ
0501: INKETGSSAP DITQASTERR DVDKSLDTAE KWSKKVAELD SVNDLSSAIS DEDFPDIMPM RKGENRFVIS KKKDRLLTSP QYQRRSVLEQ ADNSDFVPFV
0601: PFPPDYFAKK DAPAESTPDT GIVSESSPST DKLPETNASS RHSGNSQNTS QVIGPQGSSI MNNENSNRNY SQQSSSPGGY TRGGSSSQQY QQQPYGVGDR
0701: SAGTPNSGAW NPNYSQGTST DVRGGSSNYQ HQQQPHEVGD RSRGTSNTGA LNTNYSPGRF NDGRGGASNY QHQQQPHEAG GRSSGTSNTG AWNTNYSQSQ
0801: GSFNDGRGGS NNYQHQQQPC EVGDRSSGTS NTGSWNTNYS QSQGSFNDGR GGSNNYQHQQ QPREVGDRSS GTSNTGSWNT NYSQSQGRFS DGRGGSSSYQ
0901: YQTQPHQAGG QSSGSSNTLN TNYSQGSFNE GRDTSTYNQG SYSAQPSYSP GYSNHSNSNS WSSNNNQNWS GSHPDSRVST TGIDSTNPNQ GTGYSSYGGG
1001: GYTGKSLEGS AVKDPDPLDM SEEAKAERWF RRAAQIKDIS ELANIPDEDF PEIMPMRKGV NRFVVSKRKT PLERRLTSPQ YRRNLPIVSS EPDKDGS
0101: RAPSPADELA VASGSGLSAE AESAVSSCLA FARDRPDLLR SLPTKDVEVV VSNVAPALFK GGEESAQRLQ QYLAGEEDNA IQSVRAVTVD IVRYLLSYTY
0201: SSSNNYLEDK ELTDSAVRNI LAELVNSSGL PHTSSFVEST VESQPERFSR HPGQNVEMKR GDWICTRCSF MNFARNARCL ECNEHRPKKM LTGREWECPQ
0301: CEFYNYGRNM SCLRCACKRP ATTASAGAGL GGVAELLNVT NAGRSEIERK LAQSDEKAER WLSKVSQLDD SADLSSLAAD EDFPEIMPMR KGVNKFVVST
0401: RKTPLERRLA SAQYSSNNSP QATASGSKIS QTLDRILGRS ASTSAPNNQS DNGGVTAETP RKLTGHLGDI DPVPFVPLSA DLFTKPQNAK TNEQADRDSQ
0501: INKETGSSAP DITQASTERR DVDKSLDTAE KWSKKVAELD SVNDLSSAIS DEDFPDIMPM RKGENRFVIS KKKDRLLTSP QYQRRSVLEQ ADNSDFVPFV
0601: PFPPDYFAKK DAPAESTPDT GIVSESSPST DKLPETNASS RHSGNSQNTS QVIGPQGSSI MNNENSNRNY SQQSSSPGGY TRGGSSSQQY QQQPYGVGDR
0701: SAGTPNSGAW NPNYSQGTST DVRGGSSNYQ HQQQPHEVGD RSRGTSNTGA LNTNYSPGRF NDGRGGASNY QHQQQPHEAG GRSSGTSNTG AWNTNYSQSQ
0801: GSFNDGRGGS NNYQHQQQPC EVGDRSSGTS NTGSWNTNYS QSQGSFNDGR GGSNNYQHQQ QPREVGDRSS GTSNTGSWNT NYSQSQGRFS DGRGGSSSYQ
0901: YQTQPHQAGG QSSGSSNTLN TNYSQGSFNE GRDTSTYNQG SYSAQPSYSP GYSNHSNSNS WSSNNNQNWS GSHPDSRVST TGIDSTNPNQ GTGYSSYGGG
1001: GYTGKSLEGS AVKDPDPLDM SEEAKAERWF RRAAQIKDIS ELANIPDEDF PEIMPMRKGV NRFVVSKRKT PLERRLTSPQ YRRNLPIVSS EPDKDGS
001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK
Arabidopsis Description
VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.