CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, vacuole
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76489
CDX78923
CDX86457
CDX99397
CDY08148
CDY36901
CDY44976
CDY46555
CDY52947
CDY58069
CDY58070
CDY58518
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17790.1	CDY46555	AT1G51580.1	21798944
AT5G17790.1	CDY52947	AT1G51580.1	21798944
AT5G17790.1	CDX86457	AT3G27960.1	21798944
AT5G17790.1	CDY58518	AT3G27960.1	21798944
AT5G17790.1	CDY36901	AT3G48150.1	21798944
AT5G17790.1	CDY44976	AT3G48150.1	21798944
AT5G17790.1	CDY58069	AT3G48150.1	21798944
AT5G17790.1	CDY58070	AT3G48150.1	21798944
AT5G17790.1	CDY70805	AT3G48150.1	21798944
AT5G17790.1	CDY08148	AT3G49580.1	21798944
AT5G17790.1	CDX76489	AT4G19170.1	15340011
AT5G17790.1	CDX78923	AT4G19170.1	15340011
AT5G17790.1	CDX99397	AT4G19170.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006420.1-P	Field mustard	plastid, vacuole	89.59	87.71
CDX70775	Canola	plastid	84.88	86.11
CDY38459	Canola	plastid	69.33	67.88
CDY16887	Canola	plastid	65.76	64.3
AT5G17790.1	Thale cress	plastid	59.2	54.75
KRH64967	Soybean	plastid	44.37	37.88
KRG94930	Soybean	mitochondrion, plastid, vacuole	44.37	37.33
VIT_08s0056g01170.t01	Wine grape	endoplasmic reticulum, plastid	46.22	36.86
PGSC0003DMT400028376	Potato	plastid	43.22	34.87
Solyc01g057780.2.1	Tomato	mitochondrion, plastid	43.37	34.78
EES01648	Sorghum	plastid	42.65	33.26
Zm00001d012529_P001	Maize	plastid	41.37	32.12
Os01t0815700-01	Rice	plastid	42.51	31.37
Zm00001d043095_P004	Maize	mitochondrion	41.23	30.07
TraesCS3B01G370800.2	Wheat	plastid	42.08	26.89
TraesCS3D01G332700.1	Wheat	plastid	42.23	26.81
TraesCS3A01G339100.1	Wheat	nucleus	41.94	26.65
HORVU3Hr1G080150.3	Barley	mitochondrion, nucleus, plastid	41.37	26.44
GSMUA_Achr7P02560_001	Banana	plastid, vacuole	26.39	25.73
GSMUA_Achr7P21740_001	Banana	nucleus	39.37	24.56
CDY40590	Canola	plastid	13.69	23.19
CDX93678	Canola	plastid	13.69	23.02
CDX96267	Canola	mitochondrion	12.98	19.57
CDY11563	Canola	mitochondrion	12.41	18.87
CDY41729	Canola	nucleus	16.98	14.37
CDY53578	Canola	nucleus	16.69	14.08

Protein Annotations

EnsemblPlants:CDX78760	EnsemblPlantsGene:GSBRNA2T00130198001	Gene3D:2.20.28.140	Gene3D:4.10.1060.10	GO:A0A078CPH3	InterPro:IPR001876
InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	PANTHER:PTHR23111	PANTHER:PTHR23111:SF30	PFAM:PF00641	PFscan:PS50199
ProteinID:CDX78760	ProteinID:CDX78760.1	ScanProsite:PS01358	SEG:seg	SMART:SM00547	SUPFAM:SSF90209
UniParc:UPI0004EE2DCB	MapMan:16.12.5.3	:	:	:	:

Description

BnaA03g06720D

Coordinates

chrLK031815:-:2115752..2118350

Molecular Weight (calculated)

79224.8 Da

IEP (calculated)

8.478

GRAVY (calculated)

-0.742

Length

701 amino acids

Sequence
(BLAST)

001: MNSSTRLLSL LSPPPLFLLR GLRLTNLRRF HRLASPHSSV TSPNLRSLSL PVSPPPFIHT TPLGRFHTHR VRLSASDSAL SHHNQLLPEW AELLQSLSKA
101: GYFTDSALTS ESQKEFFPGF LPDELITPAL ACLALARDRP ELLEMVSRRD VEVLVESGKP FLFRKGQDSL KRMSLYLTSG NMLDVDKAST VDLMRLLLSC
201: VVDFASSEGR KHHEGENVKS SVRNLLREIA KMSFRTPESN VHGTRQHQFS GGNGQGLGSF QKNNEMKRGD WICSRCSGMN FARNVKCFQC DEARPKRQLT
301: GSEWECPQCD FYNYGRNIAC LRCDCKRPGD VSLNSANSAK DPELERRLVE NEEKAQRWFS KVAQGGSDAN SVDTDEDFPE IMPLRKGVNR YVVNTRKTPL
401: ERRLSNAAET DGTKTNRSLN EILGSTSSFA SRSDDKNASS QVVNSGFVPF VPLPPDMFAK KPDKEESLTA NNQMADEPER DEMESEERPA RWLKRITELH
501: SVPDLQEETS PEKMPMRKGE NQFVVSRKKD RSLTSPANKR RISIETKDSD FIPFVPFPPD YFAKRKQPEE TTTADTIPVP ASKNASQVVE EEPREPLSNN
601: QEPMAGKSLE GSLVKEPDLL DMSEEAKAER WFKRVAEIKN ISELSQIPDE DFPSIMPMRK GVNRFVISKR KTPLERRLAS QRQQRNPPPI TDHDPARRGD
701: T

Best Arabidopsis Sequence Match ( AT5G17790.1 )
(BLAST)

001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK

Arabidopsis Description

VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.