CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93678	Canola	plastid	92.03	91.37
AT1G48570.1	Thale cress	plastid	76.09	69.23
VIT_17s0000g02310.t01	Wine grape	mitochondrion, plastid	50.72	51.22
Solyc03g118680.2.1	Tomato	plastid	40.1	40.79
KRH39085	Soybean	plastid	44.44	40.17
PGSC0003DMT400014472	Potato	plastid	38.65	39.31
KRH48632	Soybean	mitochondrion, plastid	43.24	38.74
GSMUA_Achr6P24110_001	Banana	plastid	36.23	35.21
HORVU4Hr1G007170.4	Barley	cytosol, nucleus	34.06	28.43
Os03t0708900-01	Rice	nucleus	34.3	28.17
Zm00001d013449_P001	Maize	mitochondrion	35.02	28.1
TraesCS4D01G041700.1	Wheat	mitochondrion, plastid	35.99	25.78
TraesCS4A01G269900.1	Wheat	plastid	35.75	25.56
TraesCS4B01G044200.1	Wheat	plastid	35.75	25.56
EER93589	Sorghum	mitochondrion, plastid	34.06	25.36
CDX96267	Canola	mitochondrion	28.02	24.95
CDY11563	Canola	mitochondrion	27.78	24.95
CDY41729	Canola	nucleus	28.5	14.25
CDY53578	Canola	nucleus	28.26	14.08
CDX78760	Canola	plastid, vacuole	23.19	13.69
CDX70775	Canola	plastid	22.46	13.46
CDY38459	Canola	plastid	22.95	13.27
CDY16887	Canola	plastid	21.98	12.69

Protein Annotations

EnsemblPlants:CDY40590	EnsemblPlantsGene:GSBRNA2T00071423001	Gene3D:4.10.1060.10	GO:A0A078HPW9	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001876	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	PANTHER:PTHR23111	PANTHER:PTHR23111:SF40
PFAM:PF00641	PFscan:PS50199	ProteinID:CDY40590	ProteinID:CDY40590.1	ScanProsite:PS01358	SEG:seg
SMART:SM00547	SUPFAM:SSF90209	UniParc:UPI0004EEB047	UniProt:A0A078HPW9	MapMan:16.12.5.3	:

Description

BnaC06g02060DBnaC06g02060D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPW9]

Coordinates

chrLK032475:-:15636..18065

Molecular Weight (calculated)

47244.0 Da

IEP (calculated)

8.557

GRAVY (calculated)

-0.643

Length

414 amino acids

Sequence
(BLAST)

001: MSSSRIFLVG NSIFRPQNPS SFPLSLNRFP SVSLRFRCFS NETATAAAAA TVDSDSPSPH PWPEWINFVD RLKTKGYFTK NIEDDTVYQE MNVVKDACLS
101: FARDRYDVLR SLSSRDIQAL VERGCPNLFR KTVNSSKRIR AHVKLDEGDV CGSCELRSSC DRAYVILKES EADARTVDVM RLLLFNALDS VVVSRGEVPS
201: GRELVHESAR RLLLELLELS EKPVNPVLPK PAAKVALPPQ ERVFKSRSDE PSQRVRSQYN ADWACPKCDF LNFARNERCR ECNEVADRRS VAAVVKEGHW
301: LCPECNFSNF SRNQSCLKCK AKGPKRSSME NIEMKKGDWN CSGCGFMNFS SNKKCKQCRE QRPPRQLEPG EWECPSCDFL NYRRNTVCKK CECKRPSESN
401: NHEDDHSWKR PALL

Best Arabidopsis Sequence Match ( AT1G48570.1 )
(BLAST)

001: MSSSRIFLVG NSIFRPHKPS FPLSFNRFPS VSLRFRCFSS DAAAAVATTV DSDSPSLTPH PWPEWITFVD RLKTKGYFTK DTEDDTVYQE MILVKDACLS
101: FARDRYDVLR SLSSGDVQAL VERGCPNLFR KTVNSSKRIR AHVKLNEGDV CGSCDLRSSC DRAYVILKDT EADARTVDVM RLLLFNALDS IVISRGEVPP
201: GKELVHESAR RLLLELVEFS EKPLIPALPK PSSKESSLPS KERAFKSRND EPSQRVAFKS RNDDPSQRVA FKSRNDEPSH RVAFKSRNDE SSQRDRPLYS
301: ADWACPKCDF VNFARNERCR ECNEVADRRP VAAVVKEGDW LCPECSFLNF TRNQSCLKCK AKGPKKTSMV NIVEMKKGDW NCTGCGYMNF ASNKQCRECR
401: EQRHKTLAEP GDWECPSCDF VNFRRNDACK KCECKRPSQA NNDQEDHTWK RPALV

Arabidopsis Description

T1N15.19 [Source:UniProtKB/TrEMBL;Acc:Q9LP67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.