Factsheet for Solyc03g118680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014472	Potato	plastid	86.0	86.0
VIT_17s0000g02310.t01	Wine grape	mitochondrion, plastid	46.19	45.85
GSMUA_Achr6P24110_001	Banana	plastid	44.23	42.25
CDY40590	Canola	plastid	40.79	40.1
Bra018736.1-P	Field mustard	plastid	40.79	39.81
KRH39085	Soybean	plastid	44.47	39.52
CDX93678	Canola	plastid	40.29	39.33
KRH48632	Soybean	mitochondrion, plastid	43.49	38.31
AT1G48570.1	Thale cress	plastid	40.05	35.82
Os03t0708900-01	Rice	nucleus	40.54	32.74
HORVU4Hr1G007170.4	Barley	cytosol, nucleus	37.59	30.85
Zm00001d013449_P001	Maize	mitochondrion	38.08	30.04
TraesCS4A01G269900.1	Wheat	plastid	40.54	28.5
TraesCS4D01G041700.1	Wheat	mitochondrion, plastid	40.05	28.2
TraesCS4B01G044200.1	Wheat	plastid	39.8	27.98
Solyc08g014510.2.1	Tomato	nucleus, plastid	32.43	27.5
EER93589	Sorghum	mitochondrion, plastid	36.85	26.98
Solyc01g099230.2.1	Tomato	mitochondrion, plastid	28.26	14.69
Solyc01g057780.2.1	Tomato	mitochondrion, plastid	23.59	10.98

Protein Annotations

EnsemblPlants:Solyc03g118680.2.1	EnsemblPlantsGene:Solyc03g118680.2	Gene3D:4.10.1060.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR001876	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	PANTHER:PTHR23111	PANTHER:PTHR23111:SF40	PFAM:PF00641
PFscan:PS50199	ScanProsite:PS01358	SEG:seg	SMART:SM00547	SUPFAM:SSF90209	UniParc:UPI0002765FBA
UniProt:K4BM17	MapMan:16.12.5.3	:	:	:	:

Description

No Description!

Coordinates

chr3:-:67538264..67542652

Molecular Weight (calculated)

46036.2 Da

IEP (calculated)

8.704

GRAVY (calculated)

-0.555

Length

407 amino acids

Sequence
(BLAST)

001: MSASRLFFLL GASTVRNCNK PTNISSPFSP FRFSKPLLCP VVRFRSYNCT SATLETKTIE PLVSPRNHPW PEWVAFVDRL KSKGYITEKS TSTGEDGDGS
101: IYTDMNLLKD ACLNFSRDRS DIFKKLSTQD MQKVVEKGCP NLFRKVVNSA KRLRIHLNLD EGEVCGACNF RGSCDRAYLI LKESEGVART VDIVRVLLIY
201: AFDSAVISSG AMPPGSELIE VSARQLLSEL VELSETPIDP DHLTPAPKAS PRKKESVGSR TDGLEDVEMK RRNSTGLEGE MPKRNVEMKQ GDWICSQCTF
301: MNFARNAQCL RCKSKGPSRD APVVKEMKKG DWNCPQCTFM NFASNTKCLR CQEQRPKRQL NPGEWECPSC DFLNFRSNMV CKKCTCERPK DAKTQSKYEE
401: QLWTKPY

Best Arabidopsis Sequence Match ( AT1G48570.1 )
(BLAST)

001: MSSSRIFLVG NSIFRPHKPS FPLSFNRFPS VSLRFRCFSS DAAAAVATTV DSDSPSLTPH PWPEWITFVD RLKTKGYFTK DTEDDTVYQE MILVKDACLS
101: FARDRYDVLR SLSSGDVQAL VERGCPNLFR KTVNSSKRIR AHVKLNEGDV CGSCDLRSSC DRAYVILKDT EADARTVDVM RLLLFNALDS IVISRGEVPP
201: GKELVHESAR RLLLELVEFS EKPLIPALPK PSSKESSLPS KERAFKSRND EPSQRVAFKS RNDDPSQRVA FKSRNDEPSH RVAFKSRNDE SSQRDRPLYS
301: ADWACPKCDF VNFARNERCR ECNEVADRRP VAAVVKEGDW LCPECSFLNF TRNQSCLKCK AKGPKKTSMV NIVEMKKGDW NCTGCGYMNF ASNKQCRECR
401: EQRHKTLAEP GDWECPSCDF VNFRRNDACK KCECKRPSQA NNDQEDHTWK RPALV

Arabidopsis Description

T1N15.19 [Source:UniProtKB/TrEMBL;Acc:Q9LP67]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.