Factsheet for Solyc01g057780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
nucleus 3
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g086840.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g113740.2.1
Solyc06g072990.1.1
Solyc08g075480.2.1
Solyc08g075490.2.1
Solyc12g055780.1.1
Solyc12g055790.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17790.1	Solyc12g055780.1.1	AT1G51580.1	21798944
AT5G17790.1	Solyc12g055790.1.1	AT1G51580.1	21798944
AT5G17790.1	Solyc02g086840.2.1	AT3G27960.1	21798944
AT5G17790.1	Solyc03g113740.2.1	AT3G48150.1	21798944
AT5G17790.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT5G17790.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT5G17790.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT5G17790.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT5G17790.1	Solyc08g075480.2.1	AT4G19170.1	15340011
AT5G17790.1	Solyc08g075490.2.1	AT4G19170.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028376	Potato	plastid	92.11	92.64
VIT_08s0056g01170.t01	Wine grape	endoplasmic reticulum, plastid	47.14	46.87
KRG94930	Soybean	mitochondrion, plastid, vacuole	43.36	45.5
KRH64967	Soybean	plastid	42.22	44.95
CDX78760	Canola	plastid, vacuole	34.78	43.37
CDY38459	Canola	plastid	35.47	43.3
CDX70775	Canola	plastid	33.75	42.69
Bra006420.1-P	Field mustard	plastid, vacuole	34.9	42.6
Bra002106.1-P	Field mustard	plastid	34.78	42.46
CDY16887	Canola	plastid	32.95	40.17
AT5G17790.1	Thale cress	plastid	32.95	37.99
EES01648	Sorghum	plastid	36.61	35.6
Zm00001d012529_P001	Maize	plastid	36.61	35.44
Os01t0815700-01	Rice	plastid	36.16	33.26
Zm00001d043095_P004	Maize	mitochondrion	36.16	32.88
TraesCS3A01G339100.1	Wheat	nucleus	38.33	30.37
TraesCS3D01G332700.1	Wheat	plastid	37.99	30.07
TraesCS3B01G370800.2	Wheat	plastid	36.38	28.99
GSMUA_Achr7P21740_001	Banana	nucleus	37.19	28.91
HORVU3Hr1G080150.3	Barley	mitochondrion, nucleus, plastid	36.27	28.9
GSMUA_Achr7P02560_001	Banana	plastid, vacuole	23.11	28.09
Solyc03g118680.2.1	Tomato	plastid	10.98	23.59
Solyc08g014510.2.1	Tomato	nucleus, plastid	10.3	18.75
Solyc01g099230.2.1	Tomato	mitochondrion, plastid	11.67	13.03

Protein Annotations

MapMan:16.12.5.3	Gene3D:4.10.1060.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0046872
GO:GO:1900871	InterPro:IPR001876	UniProt:K4AVY9	PFAM:PF00641	ScanProsite:PS01358	PFscan:PS50199
PANTHER:PTHR23111	PANTHER:PTHR23111:SF30	SMART:SM00547	SUPFAM:SSF90209	EnsemblPlantsGene:Solyc01g057780.2	EnsemblPlants:Solyc01g057780.2.1
UniParc:UPI0002761D2A	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:

Description

Zinc finger protein VAR3, chloroplastic [Source:Projected from Arabidopsis thaliana (AT5G17790) UniProtKB/Swiss-Prot;Acc:Q8S9K3]

Coordinates

chr1:-:63862862..63868831

Molecular Weight (calculated)

97976.5 Da

IEP (calculated)

7.340

GRAVY (calculated)

-0.723

Length

874 amino acids

Sequence
(BLAST)

001: MASRFISLLG TPFPTFLNHL RCPSFLHLRR LACGSRRFTA YSHPHISPLS PSQQQFHAQP INNNTPLDSS SSSSSFTSHP WPEWRSLITL LTGNDQLPPA
101: VEDSDSFVTY EELSQDFLRA ATLCLDFARE RPNFIGLLSR RDIEAVVSNG TPFLFKGALE TARRMRAFLG IDGSTVLDHG NANTVDLMKY ILCYASKPSV
201: SSEKNSLYSR DLIESSCRSL LRELVEVSCG APAVNLPPAE QYDFSGRYGQ TPRPIRQNIV MKRGDWICQK CNFMNFARNN KCLECEEPRP RRQLTGGEWE
301: CPQCYFFNYG RNVVCLRCDF GRPAGASPRT THSSAEDGYN GNSAYSNGMD LKLAENEEKA QRWFSKISQM KNASDMDSAA ADEDFPEIMP PRKGENKFVV
401: STRKTPLERR LANTQYERNF GYNGIPEGNT LTGGAHSVLA TSMKQNMDQN SGTSHKGVAA DKNSESVIQH SGRGSNYVPF VPLPKDMFQK NNPTSVMDEK
501: VKEEVGVSHT PEVSHQTCSA SLGNDFGKSM EKFQSNDLLS EEKEREQAEK SESWFKKIAE LHDVKDLSSS ISDDDFPEIM PMRKGENRYV VSKKKDRSLT
601: SPMYKRQVAM EQANNSSFVP FVPFPPGYFA KRDTQQEDIT GSSSLSRVGT SSTFSNSDHK GSPMNPLSKT YSEKEDAEKT HHESDDAGFL FRDTITAQTP
701: VDQFTNSRFA SPSFSGDQGV PCVGNSVETS LALDACRTNS KDRRNSVNED VSLAETLGVG STKLPRNQNV RNGWTGKSLE GSAVKETDLL DMSEEAKAER
801: WFQRVAQIKD ISELSQIPDE DFPSIMPMRK GVNRFVVSKR KTPLERRLTS TQYRRNLPVV TSDPMKRERD NNDK

Best Arabidopsis Sequence Match ( AT5G17790.1 )
(BLAST)

001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK

Arabidopsis Description

VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.