Factsheet for Solyc08g075480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, golgi, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	golgi
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g057780.2.1
Solyc12g008780.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19170.1	Solyc01g057780.2.1	AT5G17790.1	15340011
AT4G19170.1	Solyc12g008780.1.1	AT5G56760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004978	Potato	cytosol, mitochondrion, peroxisome	39.17	94.17
PGSC0003DMT400004975	Potato	plastid	52.17	88.01
Solyc08g075490.2.1	Tomato	plastid	81.28	78.96
Bra013378.1-P	Field mustard	peroxisome	58.41	66.87
VIT_02s0087g00910.t01	Wine grape	plastid	65.16	62.77
CDX99397	Canola	plastid	61.7	60.03
CDX78923	Canola	plastid	61.87	59.9
AT4G19170.1	Thale cress	plastid	61.7	59.83
KRH76475	Soybean	plastid	60.49	59.15
Bra020970.1-P	Field mustard	plastid	58.06	59.08
CDX76489	Canola	plastid	53.73	58.27
TraesCS6A01G271600.1	Wheat	plastid	54.94	49.61
KXG30924	Sorghum	plastid	54.77	49.61
HORVU6Hr1G068720.1	Barley	plastid	55.11	49.46
TraesCS6B01G298800.1	Wheat	plastid	55.11	49.46
TraesCS6D01G251800.1	Wheat	plastid	54.77	49.45
Zm00001d051556_P001	Maize	plastid	54.59	49.37
Os02t0704000-01	Rice	plastid	54.25	49.06
Zm00001d017766_P001	Maize	plastid	53.73	48.51
Os12t0435200-01	Rice	plastid	48.01	48.09
GSMUA_Achr4P19020_001	Banana	plastid	36.92	40.49
Solyc01g087260.2.1	Tomato	plastid	31.37	33.21
Solyc01g087250.2.1	Tomato	cytosol, plastid	30.85	32.66
Solyc05g053530.1.1	Tomato	plastid	32.93	32.59
Solyc07g056570.1.1	Tomato	plastid	32.76	31.24
Solyc08g016720.1.1	Tomato	plastid	30.5	30.29
Solyc08g066720.1.1	Tomato	cytosol	18.54	25.85

Protein Annotations

EnsemblPlants:Solyc08g075480.2.1	EnsemblPlantsGene:Solyc08g075480.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150
GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543
PANTHER:PTHR10543:SF46	PFAM:PF03055	SEG:seg	UniParc:UPI000276B6E9	UniProt:K4CMR5	MapMan:9.1.6.3.2

Description

No Description!

Coordinates

chr8:-:59627153..59629023

Molecular Weight (calculated)

64086.9 Da

IEP (calculated)

8.182

GRAVY (calculated)

-0.155

Length

577 amino acids

Sequence
(BLAST)

001: MNALSSTFLS TLPQHPKSIL SFNNNNYYYY SRNTSSFTLK VFSIGDEKSI PSPPKRAQIP SRKPSLPSNI FNAFDDFVNT YIDPPRKSYV DPKYVLSNNF
101: APVDELPPTE CEVVEGSLPP CLDGAYIRNG PNPQYLPRGP YHLFDGDGML HSIKISQGKA TFCSRFVKTY KYNIENEAGF QIIPNVFSGF NGIIPSVTRG
201: AITLARIITR QFNPADGIGL ANTSLALFGG KLFALGESDL PYAVKITSDG DIITLGRHNF NGKLVWGMTA HPKIDPDTNE AFAYRYGPFP PFLIYFRVDP
301: NGIKTADVPI FSIKRPTLFH DIAITKKYAI FSDIQIGMNP IKFILAGGSP VGINSRKISR LGVIPRYAKG ESEMRWFDVP GFNNLHAINA WEEDGGDTIV
401: LIAPNILSVE HTLERMDMIH GCVEKVKINL NSGVVSRHPI STRNLDFGVI NPTYVGKKNK YVYAAIGYPP PKLSGIVKLD VSIAEVDRRD CIVACRTFGE
501: GCFCGEPFFV AKNNLGANED DGYVMLYVHN EKTEESNFLV MDATSPNLDI VANVKLPRRV PYGFHGIFVR ESDLNML

Best Arabidopsis Sequence Match ( AT4G19170.1 )
(BLAST)

001: MDSVSSSSFL SSTFSLHHSL LRRRSSSPTL LRINSAVVEE RSPITNPSDN NDRRNKPKTL HNRTNHTLVS SPPKLRPEMT LATALFTTVE DVINTFIDPP
101: SRPSVDPKHV LSDNFAPVLD ELPPTDCEII HGTLPLSLNG AYIRNGPNPQ FLPRGPYHLF DGDGMLHAIK IHNGKATLCS RYVKTYKYNV EKQTGAPVMP
201: NVFSGFNGVT ASVARGALTA ARVLTGQYNP VNGIGLANTS LAFFSNRLFA LGESDLPYAV RLTESGDIET IGRYDFDGKL AMSMTAHPKT DPITGETFAF
301: RYGPVPPFLT YFRFDSAGKK QRDVPIFSMT SPSFLHDFAI TKRHAIFAEI QLGMRMNMLD LVLEGGSPVG TDNGKTPRLG VIPKYAGDES EMKWFEVPGF
401: NIIHAINAWD EDDGNSVVLI APNIMSIEHT LERMDLVHAL VEKVKIDLVT GIVRRHPISA RNLDFAVINP AFLGRCSRYV YAAIGDPMPK ISGVVKLDVS
501: KGDRDDCTVA RRMYGSGCYG GEPFFVARDP GNPEAEEDDG YVVTYVHDEV TGESKFLVMD AKSPELEIVA AVRLPRRVPY GFHGLFVKES DLNKL

Arabidopsis Description

CCD4Probable carotenoid cleavage dioxygenase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49675]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.