Factsheet for Solyc01g087260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117
plastid: 26371478

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g087250.2.1	Tomato	cytosol, plastid	83.3	83.3
VIT_13s0064g00810.t01	Wine grape	cytosol	72.84	77.84
VIT_13s0064g00840.t01	Wine grape	extracellular	76.51	76.37
CDX93902	Canola	cytosol	73.03	75.81
CDY53711	Canola	cytosol	73.03	75.81
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	75.6	75.32
TraesCS5A01G001500.2	Wheat	cytosol	75.23	74.82
AT3G63520.1	Thale cress	cytosol	73.21	74.16
TraesCS5D01G001900.1	Wheat	cytosol, golgi	74.68	74.13
TraesCS5B01G002600.2	Wheat	cytosol, golgi, plastid	74.31	73.91
Os12t0640600-01	Rice	plasma membrane	73.21	73.89
OQU93261	Sorghum	cytosol	73.03	73.16
Zm00001d048373_P002	Maize	cytosol, plasma membrane	73.76	73.09
CDY34746	Canola	cytosol	17.06	72.66
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	71.93	72.59
Zm00001d034075_P001	Maize	cytosol	4.77	72.22
CDY34748	Canola	endoplasmic reticulum, extracellular	63.85	72.05
HORVU5Hr1G000320.9	Barley	plastid	74.5	71.6
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	74.68	70.91
TraesCS5D01G002800.1	Wheat	cytosol	71.19	70.42
TraesCS5B01G001800.1	Wheat	cytosol	69.17	69.81
Bra040449.1-P	Field mustard	cytosol	68.99	68.74
HORVU4Hr1G006300.1	Barley	cytosol	69.91	68.65
TraesCS5A01G002400.1	Wheat	cytosol	70.83	68.56
TraesCS5A01G002200.1	Wheat	cytosol	66.42	68.43
TraesCS5D01G002900.1	Wheat	plastid	69.91	62.05
Bra007826.1-P	Field mustard	plastid	68.07	61.94
CDX76782	Canola	mitochondrion	68.99	61.44
CDX76783	Canola	plastid	68.62	61.21
CDY34747	Canola	cytosol	14.31	57.78
Bra007825.1-P	Field mustard	plastid	59.82	56.7
Solyc08g016720.1.1	Tomato	plastid	35.78	33.56
Solyc07g056570.1.1	Tomato	plastid	36.33	32.73
Solyc05g053530.1.1	Tomato	plastid	34.31	32.08
Solyc08g075480.2.1	Tomato	plastid	33.21	31.37
Solyc08g075490.2.1	Tomato	plastid	34.13	31.31
Solyc08g066720.1.1	Tomato	cytosol	20.37	26.81

Protein Annotations

EMBL:AY576002	EnsemblPlants:Solyc01g087260.2.1	EnsemblPlantsGene:Solyc01g087260.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF37	PFAM:PF03055	UniParc:UPI0001C2B20E	UniProt:Q6E4P4
MapMan:9.1.6.3.1	:	:	:	:	:

Description

Carotenoid cleavage dioxygenase 1B [Source:UniProtKB/TrEMBL;Acc:Q6E4P4]

Coordinates

chr1:-:82196996..82209916

Molecular Weight (calculated)

61179.5 Da

IEP (calculated)

5.801

GRAVY (calculated)

-0.300

Length

545 amino acids

Sequence
(BLAST)

001: MGMNEEDGVA RIEGVVVVDP KPQNGVAAKA IDWVEWAIIK LMNDSTKPLP FLQGNFAPTD ETPPLKNLPV IGHLPECLNG EFVRVGPNPK FAPVAGYHWF
101: DGDGMIHGLQ IKDGKATYVS RFVRTSRLKQ EEFFGGAKFM KIGDLKGLFG LFSVYIYMLR EKLKVLDTSY GNGTANTAMI YHHGKLLALH EGDKPYVVKI
201: LEDGDLQTLG MLDYDKRLQH SFTAHPKVDP VTGEMFTFGY SQTPPFATYR VISKDGVMQD PVPITIPASV MMHDFAITEN YAIMMDLPLY FRPKEMVKNK
301: QLAYSFDPTK KARFGVLPRY AKNESLIKWF ELPNCFIFHN ANAWEEGDDV VLITSRLQNP DLDAIKGTEK EEQRDGFTNE LYEMRFNMKN GVASQKKLSE
401: AAVDFPRINE NYTGRKQRYV YGTILNNVAQ ITGVVKFDLH AEPETGKTKL EVGGNVPGIF DLGPGRFGSE AIFVPRQPGT ECEEDDGYLI LFVHDENTGK
501: SSVNVIDAKT MSAEPVAVVE LPKRVPFGFH AFFVTEEQIQ EQAKM

Best Arabidopsis Sequence Match ( AT3G63520.1 )
(BLAST)

001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI

Arabidopsis Description

CCD1Carotenoid 9,10(9',10')-cleavage dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:O65572]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.