Factsheet for TraesCS5D01G002800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G001800.1	Wheat	cytosol	93.83	95.74
TraesCS5A01G002400.1	Wheat	cytosol	97.46	95.38
HORVU4Hr1G006300.1	Barley	cytosol	93.1	92.43
TraesCS5D01G001900.1	Wheat	cytosol, golgi	87.48	87.8
Os12t0640600-01	Rice	plasma membrane	83.67	85.37
Zm00001d048373_P002	Maize	cytosol, plasma membrane	84.39	84.55
OQU93261	Sorghum	cytosol	83.3	84.38
TraesCS5D01G002900.1	Wheat	plastid	88.75	79.64
GSMUA_Achr3P29770_001	Banana	cytosol, plasma membrane	76.22	76.78
Zm00001d034075_P001	Maize	cytosol	4.9	75.0
VIT_13s0064g00810.t01	Wine grape	cytosol	69.15	74.71
CDX93902	Canola	cytosol	70.78	74.29
CDY53711	Canola	cytosol	70.6	74.1
AT3G63520.1	Thale cress	cytosol	71.87	73.61
Solyc01g087250.2.1	Tomato	cytosol, plastid	72.78	73.58
VIT_13s0064g00840.t01	Wine grape	extracellular	72.23	72.89
Solyc01g087260.2.1	Tomato	plastid	70.42	71.19
CDY34748	Canola	endoplasmic reticulum, extracellular	61.71	70.39
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	67.51	68.89
CDY34746	Canola	cytosol	15.79	67.97
Bra040449.1-P	Field mustard	cytosol	66.42	66.91
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	69.69	66.9
Bra007826.1-P	Field mustard	plastid	66.61	61.27
CDX76782	Canola	mitochondrion	66.61	59.97
CDX76783	Canola	plastid	65.7	59.25
Bra007825.1-P	Field mustard	plastid	57.35	54.96
CDY34747	Canola	cytosol	13.25	54.07
TraesCS5D01G383500.1	Wheat	plastid	36.66	33.95
TraesCS2D01G251600.1	Wheat	plastid	34.66	32.82
TraesCS2D01G013000.1	Wheat	cytosol	35.03	32.01
TraesCS5D01G038800.1	Wheat	plastid	35.03	31.38
TraesCS6D01G251800.1	Wheat	plastid	33.76	29.11
TraesCS5D01G186900.1	Wheat	cytosol	28.13	23.96

Protein Annotations

EnsemblPlants:TraesCS5D01G002800.1	EnsemblPlantsGene:TraesCS5D01G002800	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF37	PFAM:PF03055
MapMan:9.1.6.3.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:2684813..2688683

Molecular Weight (calculated)

62262.6 Da

IEP (calculated)

5.876

GRAVY (calculated)

-0.335

Length

551 amino acids

Sequence
(BLAST)

001: MGEDAQRKGA AMVVVPAPRP RKGVASWAVD LLERLAVRLR HDDEKAEPLP WLSGNFAPVP DETPPAAGLS VRGHLPKCLN GEFVRVGPNP KFAPVAGYHW
101: FDGDGMIHAM RIKDGKATYV SRYVKTSRLE QEEYFGGAKF TKIGDLKGVF GLFMVLTQEL RKKLKVLDVT YGFGTANTAL IYHHGKLMAL SESDKPYVVK
201: ILEDGDLQTL GLLDYDKRLK HPFTAHPKVD PFTDEMFTFG YSHEPPYCTY RVITKGGIML DPVPITIPES VMMHDFAITE NYSIFMDLPM FFRPKEMAKN
301: GEFIYKFDPT KNARFGILQR YEKDEKTIRW FELPNCFIFH NANAWEEGDE VILITCRLNN LDLDQVNGHQ SDKLEDPGNE LYEMRFNMKT GAASQKQLSV
401: SAIDFPRINE SYTGRKQRYV YCTILESTVK VTGILKMTGI IKFDLHAEPE SDKEQLEVGG NVRGIYDLGP GRFCSEAVFV PKEPGVLGEE DDGYLIFFVH
501: DENTGKSEIN VIDAKTMSAD PVAVVELPSR VPYGFHAFFV NEEQLGHQVE R

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.