Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 1
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS3A01G339100.1 | |
TraesCS3B01G370800.2 | |
TraesCS3D01G332700.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G30100.1 | TraesCS3A01G339100.1 | AT5G17790.1 | 15340011 |
AT1G30100.1 | TraesCS3B01G370800.2 | AT5G17790.1 | 15340011 |
AT1G30100.1 | TraesCS3D01G332700.1 | AT5G17790.1 | 15340011 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2B01G268400.1 | Wheat | plastid | 95.36 | 93.12 |
TraesCS2A01G250600.1 | Wheat | plastid | 93.99 | 92.24 |
Zm00001d018819_P001 | Maize | plastid | 79.9 | 81.15 |
OQU88453 | Sorghum | plastid | 79.21 | 80.45 |
Zm00001d007876_P001 | Maize | plastid | 79.04 | 80.0 |
Os07t0154100-01 | Rice | plastid | 79.55 | 79.55 |
Bra001552.1-P | Field mustard | cytosol | 45.88 | 67.42 |
CDX82482 | Canola | cytosol | 45.7 | 67.17 |
CDY57471 | Canola | cytosol | 45.53 | 66.92 |
PGSC0003DMT400071048 | Potato | cytosol, mitochondrion | 57.9 | 66.6 |
CDX98456 | Canola | cytosol | 28.87 | 65.88 |
TraesCS5D01G383500.1 | Wheat | plastid | 65.64 | 64.2 |
GSMUA_Achr2P12950_001 | Banana | plastid | 63.23 | 62.48 |
CDY39117 | Canola | mitochondrion | 59.28 | 62.39 |
Bra012603.1-P | Field mustard | cytosol | 47.25 | 62.22 |
GSMUA_Achr4P22870_001 | Banana | plastid | 63.75 | 61.73 |
GSMUA_Achr7P01250_001 | Banana | plastid | 63.57 | 61.36 |
GSMUA_Achr5P02570_001 | Banana | plastid | 63.75 | 60.82 |
GSMUA_Achr6P31180_001 | Banana | plastid | 62.89 | 60.7 |
TraesCS5D01G038800.1 | Wheat | plastid | 63.92 | 60.49 |
VIT_19s0093g00550.t01 | Wine grape | plastid | 62.03 | 59.28 |
Zm00001d042076_P001 | Maize | cytosol, plastid | 42.44 | 58.81 |
CDY33218 | Canola | plastid | 60.31 | 58.7 |
GSMUA_Achr4P31460_001 | Banana | plastid | 60.65 | 58.54 |
PGSC0003DMT400039054 | Potato | plastid | 58.25 | 58.45 |
Solyc08g016720.1.1 | Tomato | plastid | 58.25 | 58.35 |
Bra027336.1-P | Field mustard | plastid | 59.79 | 58.29 |
CDX98455 | Canola | plastid | 59.79 | 58.29 |
CDX97576 | Canola | plastid | 59.79 | 58.29 |
Bra021558.1-P | Field mustard | plastid | 59.79 | 58.19 |
Solyc07g056570.1.1 | Tomato | plastid | 60.48 | 58.18 |
VIT_10s0003g03750.t01 | Wine grape | plastid | 60.31 | 58.02 |
CDY52448 | Canola | plastid | 59.97 | 57.97 |
AT3G14440.1 | Thale cress | plastid | 59.62 | 57.93 |
Bra035033.1-P | Field mustard | plastid | 59.79 | 57.81 |
CDX88443 | Canola | plastid | 59.62 | 57.64 |
Bra008358.1-P | Field mustard | plastid | 58.08 | 57.58 |
Bra032359.1-P | Field mustard | plastid | 57.73 | 57.14 |
CDY26294 | Canola | plastid | 57.73 | 57.05 |
AT1G30100.1 | Thale cress | plastid | 57.56 | 56.88 |
CDY61838 | Canola | plastid | 57.56 | 56.88 |
Zm00001d022623_P001 | Maize | cytosol | 35.57 | 55.5 |
Bra013298.1-P | Field mustard | plastid | 55.33 | 55.42 |
CDX78842 | Canola | plastid | 54.98 | 55.08 |
CDX99475 | Canola | plastid | 54.98 | 55.08 |
CDY55629 | Canola | cytosol, plastid | 54.98 | 54.89 |
AT4G18350.1 | Thale cress | cytosol, plastid | 54.81 | 54.72 |
CDY01534 | Canola | cytosol, plastid | 54.81 | 54.72 |
AT1G78390.1 | Thale cress | cytosol, plastid | 60.14 | 53.27 |
CDX98457 | Canola | plastid | 28.01 | 51.75 |
TraesCS2D01G013000.1 | Wheat | cytosol | 52.06 | 50.25 |
KRH45171 | Soybean | plastid | 12.03 | 42.42 |
TraesCS5D01G001900.1 | Wheat | cytosol, golgi | 33.68 | 35.7 |
TraesCS6D01G251800.1 | Wheat | plastid | 38.49 | 35.05 |
TraesCS5D01G002800.1 | Wheat | cytosol | 32.82 | 34.66 |
TraesCS5D01G002900.1 | Wheat | plastid | 32.47 | 30.78 |
TraesCS5D01G186900.1 | Wheat | cytosol | 24.91 | 22.41 |
Protein Annotations
EnsemblPlants:TraesCS2D01G251600.1 | EnsemblPlantsGene:TraesCS2D01G251600 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0016702 | GO:GO:0055114 | InterPro:Carotenoid_Oase | PANTHER:PTHR10543 | PANTHER:PTHR10543:SF49 | PFAM:PF03055 |
MapMan:11.1.1.4 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:301378105..301379853
Molecular Weight (calculated)
63025.8 Da
IEP (calculated)
6.274
GRAVY (calculated)
-0.244
Length
582 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSITAPAA APGSVVRPPA KVAPNDPRKN ADGSAVVTWK GPMRAAPARK KWPNPFQRMV AAALDAVEDR LVAGILERKH PLPRTVDPAV QIAGNYAPVG
101: ELPPAGPEDL PVVSGRVPAC LEGVYVRNGA NPLHAPRAGH HLFDGDGMLH AVRLGGGRAE SYACRFTETA RLRQEREIGR PIFPKAIGEL HGHSGVARLA
201: LFGARSLCGV VDASQGIGVA NAGLVYHDGR LLAMSEDDLP YHVRVTPDGD LETVGRYDFN GQLDGAMIAH PKLDPATGEL FALSYNVVSK PYLKYLYFTA
301: DGHKSHDVDI PVDEPPMIHD FAVTENYAVV PDQQIVFKLQ EMVLGGSPVV YDKNKTARFG VLPKRAANAL ELRWVEVPDC FCFHLWNAWG GEATGEIVVI
401: GSCMTPPDAV FNESPDQEQS FRSVLSEIRL DPRTGTSRRR AVLREADQVN LEAGMVNRQL LGRKTRYAYL AIAEPWPRVS GFAKVDLESG TAEKFTYGEG
501: RYGGEPCFVP HADGSGAEDD GYVLCFVHDE SRGSADGTSS ELLVVNARDL RSEATVELPG RVPYGFHGTF ITATELQRQA QL
101: ELPPAGPEDL PVVSGRVPAC LEGVYVRNGA NPLHAPRAGH HLFDGDGMLH AVRLGGGRAE SYACRFTETA RLRQEREIGR PIFPKAIGEL HGHSGVARLA
201: LFGARSLCGV VDASQGIGVA NAGLVYHDGR LLAMSEDDLP YHVRVTPDGD LETVGRYDFN GQLDGAMIAH PKLDPATGEL FALSYNVVSK PYLKYLYFTA
301: DGHKSHDVDI PVDEPPMIHD FAVTENYAVV PDQQIVFKLQ EMVLGGSPVV YDKNKTARFG VLPKRAANAL ELRWVEVPDC FCFHLWNAWG GEATGEIVVI
401: GSCMTPPDAV FNESPDQEQS FRSVLSEIRL DPRTGTSRRR AVLREADQVN LEAGMVNRQL LGRKTRYAYL AIAEPWPRVS GFAKVDLESG TAEKFTYGEG
501: RYGGEPCFVP HADGSGAEDD GYVLCFVHDE SRGSADGTSS ELLVVNARDL RSEATVELPG RVPYGFHGTF ITATELQRQA QL
001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
Arabidopsis Description
NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.