CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000157_P001	Maize	cytosol	27.88	43.81
Zm00001d000095_P001	Maize	cytosol	27.88	28.05
Zm00001d019813_P001	Maize	plastid	28.48	24.87
KRH43866	Soybean	plastid	66.67	23.97
Zm00001d009286_P001	Maize	plastid	30.3	19.84
Zm00001d033377_P001	Maize	plastid	30.91	17.96
KRH58642	Soybean	plastid	47.27	13.27
KRH42549	Soybean	plastid	47.27	13.24
Zm00001d018819_P001	Maize	plastid	44.24	12.74
OQU88453	Sorghum	plastid	44.24	12.74
Zm00001d007876_P001	Maize	plastid	43.03	12.35
GSMUA_Achr4P22870_001	Banana	plastid	44.85	12.31
GSMUA_Achr2P12950_001	Banana	plastid	43.64	12.22
GSMUA_Achr4P31460_001	Banana	plastid	44.24	12.11
TraesCS2D01G251600.1	Wheat	plastid	42.42	12.03
TraesCS2A01G250600.1	Wheat	plastid	43.03	11.97
GSMUA_Achr5P02570_001	Banana	plastid	44.24	11.97
GSMUA_Achr7P01250_001	Banana	plastid	43.64	11.94
TraesCS2B01G268400.1	Wheat	plastid	43.03	11.91
Os07t0154100-01	Rice	plastid	41.21	11.68
EER93751	Sorghum	plastid	41.21	11.13
GSMUA_Achr6P31180_001	Banana	plastid	40.61	11.11
TraesCS5B01G029300.1	Wheat	plastid	41.21	11.07
HORVU5Hr1G008050.1	Barley	plastid	40.61	11.04
Os03t0645900-00	Rice	plastid	40.61	11.02
Zm00001d013689_P001	Maize	plastid	40.0	10.98
Zm00001d033222_P001	Maize	extracellular	40.0	10.93
TraesCS5D01G038800.1	Wheat	plastid	40.61	10.89
TraesCS5A01G374000.1	Wheat	plastid	38.79	10.83
TraesCS5B01G375900.1	Wheat	plastid	38.79	10.76
TraesCS5D01G383500.1	Wheat	plastid	38.79	10.76
HORVU5Hr1G044510.1	Barley	cytosol	38.79	10.67
Zm00001d041319_P001	Maize	plastid	38.79	10.6
Zm00001d031086_P001	Maize	plastid	36.36	10.54
HORVU5Hr1G054970.1	Barley	cytosol	36.97	10.03
HORVU5Hr1G092850.2	Barley	plastid	38.79	9.94
Zm00001d035724_P001	Maize	plastid	29.09	7.56
KRH27468	Soybean	endoplasmic reticulum, mitochondrion	21.82	6.67
KRH20815	Soybean	cytosol, endoplasmic reticulum, extracellular	22.42	6.45
KRH52736	Soybean	mitochondrion, plastid	21.21	5.96
KRH76475	Soybean	plastid	21.21	5.93
KRH13600	Soybean	plastid	20.0	5.74
KRH62063	Soybean	cytosol	15.76	5.38
KRH62062	Soybean	cytosol, plastid	18.18	5.18
KRH52732	Soybean	plastid	18.18	5.16
Zm00001d023458_P001	Maize	cytosol	3.64	4.26
Zm00001d027592_P001	Maize	mitochondrion	10.3	3.99
Zm00001d042076_P001	Maize	cytosol, plastid	7.27	2.86
Zm00001d023690_P001	Maize	cytosol	0.61	0.76
Os12t0617400-01	Rice	cytosol	0.61	0.35
Zm00001d022623_P001	Maize	cytosol	0.61	0.27
Zm00001d008638_P001	Maize	cytosol	0.0	0.0
Zm00001d027690_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EMBL:ACUP02005003	EnsemblPlants:KRH45171	EnsemblPlantsGene:GLYMA_08G255400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0055114	InterPro:Carotenoid_Oase
PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	PFAM:PF03055	ProteinID:KRH45171	ProteinID:KRH45171.1	SEG:seg
UniParc:UPI000296F5CD	UniProt:K7L8V1	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:22635755..22636252

Molecular Weight (calculated)

18327.2 Da

IEP (calculated)

8.388

GRAVY (calculated)

-0.154

Length

165 amino acids

Sequence
(BLAST)

001: MFKDSPLCVV LKYQPTSTTT TTTTTTTTPA RETKPVIASP SETKHPLPQK WNFLQKAAAS ALDMVEIGLV SHERQHPLPK IADLRVQITG NFTPVPEHLA
101: HQFLPVIGKI PKCIECVYIC NGANPLYEPV VGHHFFDRDD MVHVVKFHSG AASYACRFTK TQCLS

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.