Factsheet for TraesCS5D01G038800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G339100.1
TraesCS3B01G370800.2
TraesCS3D01G332700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	TraesCS3A01G339100.1	AT5G17790.1	15340011
AT1G30100.1	TraesCS3B01G370800.2	AT5G17790.1	15340011
AT1G30100.1	TraesCS3D01G332700.1	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G029300.1	Wheat	plastid	98.05	98.21
HORVU5Hr1G008050.1	Barley	plastid	95.12	96.38
Os12t0617400-01	Rice	cytosol	39.19	85.16
Zm00001d031086_P001	Maize	plastid	73.17	79.09
TraesCS5D01G383500.1	Wheat	plastid	75.28	77.82
Zm00001d041319_P001	Maize	plastid	74.96	76.32
Bra001552.1-P	Field mustard	cytosol	47.32	73.48
CDX82482	Canola	cytosol	47.32	73.48
CDY57471	Canola	cytosol	46.67	72.47
CDX98456	Canola	cytosol	29.27	70.59
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	57.72	70.16
Bra012603.1-P	Field mustard	cytosol	48.94	68.1
CDY39117	Canola	mitochondrion	60.65	67.45
GSMUA_Achr5P02570_001	Banana	plastid	64.06	64.59
GSMUA_Achr4P22870_001	Banana	plastid	62.76	64.23
Bra021558.1-P	Field mustard	plastid	62.44	64.21
GSMUA_Achr2P12950_001	Banana	plastid	61.46	64.18
TraesCS2D01G251600.1	Wheat	plastid	60.49	63.92
Bra027336.1-P	Field mustard	plastid	61.95	63.82
CDY33218	Canola	plastid	61.95	63.71
CDX98455	Canola	plastid	61.63	63.48
GSMUA_Achr6P31180_001	Banana	plastid	62.11	63.35
GSMUA_Achr4P31460_001	Banana	plastid	61.95	63.18
CDX97576	Canola	plastid	61.3	63.15
AT3G14440.1	Thale cress	plastid	61.3	62.94
PGSC0003DMT400039054	Potato	plastid	59.35	62.93
GSMUA_Achr7P01250_001	Banana	plastid	61.63	62.85
Solyc08g016720.1.1	Tomato	plastid	59.02	62.48
AT1G30100.1	Thale cress	plastid	59.19	61.8
Bra032359.1-P	Field mustard	plastid	58.86	61.56
VIT_19s0093g00550.t01	Wine grape	plastid	60.81	61.41
CDY61838	Canola	plastid	58.54	61.12
CDY26294	Canola	plastid	58.54	61.12
VIT_10s0003g03750.t01	Wine grape	plastid	59.84	60.83
Solyc07g056570.1.1	Tomato	plastid	59.84	60.83
Bra013298.1-P	Field mustard	plastid	57.07	60.41
CDX78842	Canola	plastid	56.91	60.24
CDX99475	Canola	plastid	56.75	60.07
CDX88443	Canola	plastid	58.7	59.97
CDY55629	Canola	cytosol, plastid	56.75	59.86
CDY52448	Canola	plastid	58.37	59.63
CDY01534	Canola	cytosol, plastid	56.42	59.52
Bra035033.1-P	Field mustard	plastid	58.21	59.47
AT4G18350.1	Thale cress	cytosol, plastid	55.94	59.01
Bra008358.1-P	Field mustard	plastid	56.1	58.77
CDX98457	Canola	plastid	28.78	56.19
AT1G78390.1	Thale cress	cytosol, plastid	59.84	56.01
TraesCS2D01G013000.1	Wheat	cytosol	49.27	50.25
Zm00001d035724_P001	Maize	plastid	43.41	42.05
KRH45171	Soybean	plastid	10.89	40.61
TraesCS5D01G001900.1	Wheat	cytosol, golgi	32.03	35.88
TraesCS5D01G002800.1	Wheat	cytosol	31.38	35.03
TraesCS6D01G251800.1	Wheat	plastid	35.28	33.96
TraesCS5D01G002900.1	Wheat	plastid	31.22	31.27
TraesCS5D01G186900.1	Wheat	cytosol	25.37	24.11

Protein Annotations

EnsemblPlants:TraesCS5D01G038800.1	EnsemblPlantsGene:TraesCS5D01G038800	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF26	PFAM:PF03055
SEG:seg	MapMan:11.1.1.4	:	:	:	:

Description

No Description!

Coordinates

chr5D:+:38723823..38725670

Molecular Weight (calculated)

66686.7 Da

IEP (calculated)

5.752

GRAVY (calculated)

-0.200

Length

615 amino acids

Sequence
(BLAST)

001: MQTLSAQPLA SSSASSSIQH HHGRRRGASS VRFAPCAAAA AADSVLIAAS TSTARTPAYV SSPSTRKVPG YEQSGPPAIA SPHKQGSSSG KDGQSLNFFQ
101: RAAAAALDAF EEGFIHNVLE RPHALPRTAD PAVQIAGNFA PVGEQAPVRA LPVSGRIPPF INGVYARNGA NPCFEPTAGH HLFDGDGMVH AIRIRNGAAE
201: SYTCRFTETA RLSQERAVGK PVFPKTIGEL HGHSGIARLA LFYARGACGL VDPSHGTGVA NAGLVYFNGR LLAMSEDDLP YQVRVTADGD LETVGRYDFD
301: GQLDCAMIAH PKLDPVSGEL FALSYDVIKK PYLKYFYFHA DGTKSADVEI ELDQPTMIHD FAITENFVVV PDHQMVFKLA EMFRGGSPVM LDKEKTSRFG
401: VLPKYAKHSS EMMWVDVPDC FCFHLWNSWE EPETDEVVVI GSCMTPADSI FNDTDDHLES VLTEIRLNTR TGESTRRAIL PLESQVNLEV GMVNRNMLGR
501: KTRYAYLAVA EPWPKVSGFA KVDLVTGELT KFEYGEGRFG GEPCFVPMDG EHARPGAEDD GYVLSFVRDE AAGTSELLVV NAADMRLEAT VQLPSRVPYG
601: FHGTFIGAAD LDAQH

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.