Factsheet for Zm00001d041319_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012529_P001
Zm00001d043095_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	Zm00001d012529_P001	AT5G17790.1	15340011
AT1G30100.1	Zm00001d043095_P004	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031086_P001	Maize	plastid	87.58	92.97
Os12t0617400-01	Rice	cytosol	39.07	83.39
Zm00001d023690_P001	Maize	cytosol	17.55	80.92
Zm00001d008638_P001	Maize	cytosol	10.93	80.49
Zm00001d000157_P001	Maize	cytosol	13.91	80.0
Zm00001d000095_P001	Maize	cytosol	21.69	79.88
Zm00001d027690_P001	Maize	cytosol	10.1	79.22
Zm00001d033222_P001	Maize	extracellular	77.65	77.65
Zm00001d013689_P001	Maize	plastid	76.66	77.04
HORVU5Hr1G008050.1	Barley	plastid	76.16	75.78
TraesCS5D01G038800.1	Wheat	plastid	76.32	74.96
TraesCS5B01G029300.1	Wheat	plastid	76.16	74.92
Bra001552.1-P	Field mustard	cytosol	45.86	69.95
CDX82482	Canola	cytosol	45.86	69.95
CDY57471	Canola	cytosol	45.2	68.94
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	57.62	68.77
Bra012603.1-P	Field mustard	cytosol	49.5	67.65
Zm00001d018819_P001	Maize	plastid	62.75	66.14
Zm00001d007876_P001	Maize	plastid	62.75	65.91
CDX98456	Canola	cytosol	27.81	65.88
GSMUA_Achr2P12950_001	Banana	plastid	63.41	65.03
CDY39117	Canola	mitochondrion	59.27	64.74
Zm00001d023458_P001	Maize	cytosol	15.07	64.54
GSMUA_Achr4P22870_001	Banana	plastid	64.07	64.39
GSMUA_Achr7P01250_001	Banana	plastid	62.91	63.02
GSMUA_Achr5P02570_001	Banana	plastid	63.58	62.95
GSMUA_Achr4P31460_001	Banana	plastid	62.75	62.85
GSMUA_Achr6P31180_001	Banana	plastid	61.59	61.69
VIT_19s0093g00550.t01	Wine grape	plastid	62.09	61.58
CDY33218	Canola	plastid	60.1	60.7
Bra021558.1-P	Field mustard	plastid	60.1	60.7
AT1G30100.1	Thale cress	plastid	58.77	60.27
Bra032359.1-P	Field mustard	plastid	58.61	60.2
PGSC0003DMT400039054	Potato	plastid	57.78	60.17
Bra027336.1-P	Field mustard	plastid	59.44	60.13
CDY26294	Canola	plastid	58.44	59.93
AT3G14440.1	Thale cress	plastid	59.27	59.77
CDY61838	Canola	plastid	58.28	59.76
Bra013298.1-P	Field mustard	plastid	57.45	59.72
VIT_10s0003g03750.t01	Wine grape	plastid	59.77	59.67
CDX98455	Canola	plastid	58.94	59.63
Solyc08g016720.1.1	Tomato	plastid	57.28	59.55
CDX97576	Canola	plastid	58.77	59.46
Bra008358.1-P	Field mustard	plastid	57.78	59.45
CDX78842	Canola	plastid	57.12	59.38
Solyc07g056570.1.1	Tomato	plastid	59.27	59.17
CDX88443	Canola	plastid	58.94	59.14
CDX99475	Canola	plastid	56.79	59.04
CDY52448	Canola	plastid	58.77	58.97
Bra035033.1-P	Field mustard	plastid	58.61	58.8
CDY55629	Canola	cytosol, plastid	56.46	58.49
CDY01534	Canola	cytosol, plastid	56.29	58.32
AT4G18350.1	Thale cress	cytosol, plastid	55.79	57.8
AT1G78390.1	Thale cress	cytosol, plastid	59.11	54.34
CDX98457	Canola	plastid	28.15	53.97
Zm00001d042076_P001	Maize	cytosol, plastid	33.94	48.81
Zm00001d035724_P001	Maize	plastid	48.34	45.98
Zm00001d022623_P001	Maize	cytosol	27.81	45.04
Zm00001d019813_P001	Maize	plastid	14.07	44.97
Zm00001d034075_P001	Maize	cytosol	2.48	41.67
KRH45171	Soybean	plastid	10.6	38.79
Zm00001d009286_P001	Maize	plastid	15.23	36.51
Zm00001d048373_P002	Maize	cytosol, plasma membrane	32.95	36.18
Zm00001d051556_P001	Maize	plastid	37.09	35.11
Zm00001d017766_P001	Maize	plastid	36.59	34.59
Zm00001d033377_P001	Maize	plastid	15.56	33.1
Zm00001d027592_P001	Maize	mitochondrion	21.19	30.05
Zm00001d020069_P002	Maize	plastid	23.84	25.76
Zm00001d045232_P001	Maize	plastid	22.52	22.19

Protein Annotations

EnsemblPlants:Zm00001d041319_P001	EnsemblPlants:Zm00001d041319_T001	EnsemblPlantsGene:Zm00001d041319	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF26	PFAM:PF03055	ProteinID:ONM32808.1	SEG:seg
UniParc:UPI00084360AE	UniProt:A0A1D6MVG7	MapMan:11.1.1.4	:	:	:

Description

nine-cis-epoxycarotenoid dioxygenase3 nine-cis-epoxycarotenoid dioxygenase3

Coordinates

chr3:-:111919013..111920827

Molecular Weight (calculated)

64761.9 Da

IEP (calculated)

6.735

GRAVY (calculated)

-0.141

Length

604 amino acids

Sequence
(BLAST)

001: MQALTARSPA SSSCPSSSTV HRRGGTRTRS TARFAPPRAA AAAANSVFSA PPAAVRYAAP PKPAAPIAPV PAPAPAAGGE KGLSFLQRAA SAALDAFESG
101: VIAGLLERPR ALPRSADPAV QIAGNFAPVG EQPPVRSLPV SGRIPPFISG VYARNGANPC FDPAAGHHLF DGDGMVHAVR IRNGAAESYA CRFTETARLR
201: QERALGRAVF PKAIGELHGH SGIARLALFY ARGLCGLVDA SRGTGVANAG LVYFNGRLLA MSEDDLPYQV RVTADGDLRT VGRYDFEGQL GCASMIAHPK
301: LDPASGDLFA LSYDVIRRPY LRYFYFRPDG TKSDDVEIPL EQPTMIHDFA ITERFVVVPD HQVVFKLGEM LRGGSPVVLD QGKTSRFGVL PKYARDASEM
401: VWVDVPDCFC FHLWNAWEEP GTGEVVVVGS CMTPADSIFN DDGGEDGRLQ SVLTEIRLDT RTGASTRRAV LPPSAQVNLE VGMVNRNMVG RRTRYAYLAV
501: AEPWPKVSGF AKVDLDTGDL VRFDYGDGRF GGEPCFVPTE GAPARGEDDG YILSLVRDER AGTSELLVVN AADMRLEATV QLPSRVPYGF HGTFIGEREL
601: EAQA

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.