Factsheet for AT1G78390.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88443	Canola	plastid	80.06	87.38
CDY52448	Canola	plastid	79.6	86.88
Bra035033.1-P	Field mustard	plastid	79.45	86.71
Bra008358.1-P	Field mustard	plastid	74.73	83.65
Zm00001d008638_P001	Maize	cytosol	8.98	71.95
Zm00001d023690_P001	Maize	cytosol	14.31	71.76
Zm00001d027690_P001	Maize	cytosol	8.37	71.43
AT3G14440.1	Thale cress	plastid	62.1	68.11
Os12t0617400-01	Rice	cytosol	29.07	67.49
AT1G30100.1	Thale cress	plastid	58.14	64.86
AT4G18350.1	Thale cress	cytosol, plastid	56.32	63.46
TraesCS5D01G383500.1	Wheat	plastid	56.77	62.69
TraesCS5A01G374000.1	Wheat	plastid	56.32	62.61
TraesCS5B01G375900.1	Wheat	plastid	56.47	62.35
Zm00001d031086_P001	Maize	plastid	53.88	62.21
OQU88453	Sorghum	plastid	53.73	61.61
Zm00001d033222_P001	Maize	extracellular	56.47	61.42
Zm00001d018819_P001	Maize	plastid	53.42	61.26
GSMUA_Achr4P22870_001	Banana	plastid	56.01	61.23
EER93751	Sorghum	plastid	56.93	61.21
GSMUA_Achr6P31180_001	Banana	plastid	56.01	61.03
Os03t0645900-00	Rice	plastid	56.47	61.02
GSMUA_Achr5P02570_001	Banana	plastid	56.32	60.66
Os07t0154100-01	Rice	plastid	53.73	60.65
HORVU5Hr1G008050.1	Barley	plastid	56.01	60.63
Zm00001d007876_P001	Maize	plastid	52.97	60.52
GSMUA_Achr2P12950_001	Banana	plastid	54.03	60.27
Zm00001d013689_P001	Maize	plastid	55.1	60.23
GSMUA_Achr7P01250_001	Banana	plastid	55.25	60.2
TraesCS2D01G251600.1	Wheat	plastid	53.27	60.14
TraesCS5B01G029300.1	Wheat	plastid	56.16	60.1
TraesCS5D01G038800.1	Wheat	plastid	56.01	59.84
HORVU5Hr1G054970.1	Barley	cytosol	55.25	59.7
HORVU5Hr1G092850.2	Barley	plastid	58.3	59.47
TraesCS2B01G268400.1	Wheat	plastid	53.73	59.23
Zm00001d041319_P001	Maize	plastid	54.34	59.11
GSMUA_Achr4P31460_001	Banana	plastid	54.03	58.87
Zm00001d000095_P001	Maize	cytosol	14.46	57.93
TraesCS2A01G250600.1	Wheat	plastid	51.9	57.5
HORVU5Hr1G044510.1	Barley	cytosol	52.51	57.5
Zm00001d000157_P001	Maize	cytosol	8.68	54.29
AT3G24220.1	Thale cress	plastid	46.12	52.51
Zm00001d023458_P001	Maize	cytosol	10.81	50.35
Zm00001d042076_P001	Maize	cytosol, plastid	29.53	46.19
Zm00001d022623_P001	Maize	cytosol	23.59	41.55
Zm00001d035724_P001	Maize	plastid	36.23	37.48
AT3G63520.1	Thale cress	cytosol	30.44	37.17
Zm00001d019813_P001	Maize	plastid	10.2	35.45
AT4G19170.1	Thale cress	plastid	30.29	33.45
Zm00001d009286_P001	Maize	plastid	10.65	27.78
Zm00001d027592_P001	Maize	mitochondrion	17.05	26.29
Zm00001d033377_P001	Maize	plastid	11.11	25.7

Protein Annotations

MapMan:11.1.1.4	EntrezGene:844175	ProteinID:AAF71797.1	ProteinID:AEE36100.1	ArrayExpress:AT1G78390	EnsemblPlantsGene:AT1G78390
RefSeq:AT1G78390	TAIR:AT1G78390	RefSeq:AT1G78390-TAIR-G	EnsemblPlants:AT1G78390.1	TAIR:AT1G78390.1	Unigene:At.34302
InterPro:Carotenoid_Oase	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009688
GO:GO:0009791	GO:GO:0009987	GO:GO:0010162	GO:GO:0016491	GO:GO:0016702	GO:GO:0045549
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	Symbol:NCED9	RefSeq:NP_177960.1	PFAM:PF03055
PO:PO:0009009	PO:PO:0009010	PO:PO:0020057	PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	UniProt:Q9M9F5
UniParc:UPI00000A7667	SEG:seg	:	:	:	:

Description

NCED99-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F5]

Coordinates

chr1:-:29490705..29492875

Molecular Weight (calculated)

73019.2 Da

IEP (calculated)

7.062

GRAVY (calculated)

-0.315

Length

657 amino acids

Sequence
(BLAST)

001: MTIITIISGM YIYSLLSQDA HHSQYGQNTN LVLKKPIPKP QTAAFNQEST MASTTLLPST STQFLDRTFS TSSSSSRPKL QSLSFSSTLR NKKLVVPCYV
101: SSSVNKKSSV SSSLQSPTFK PPSWKKLCND VTNLIPKTTN QNPKLNPVQR TAAMVLDAVE NAMISHERRR HPHPKTADPA VQIAGNFFPV PEKPVVHNLP
201: VTGTVPECIQ GVYVRNGANP LHKPVSGHHL FDGDGMVHAV RFDNGSVSYA CRFTETNRLV QERECGRPVF PKAIGELHGH LGIAKLMLFN TRGLFGLVDP
301: TGGLGVANAG LVYFNGHLLA MSEDDLPYHV KVTQTGDLET SGRYDFDGQL KSTMIAHPKI DPETRELFAL SYDVVSKPYL KYFRFTSDGE KSPDVEIPLD
401: QPTMIHDFAI TENFVVIPDQ QVVFRLPEMI RGGSPVVYDE KKKSRFGILN KNAKDASSIQ WIEVPDCFCF HLWNSWEEPE TDEVVVIGSC MTPPDSIFNE
501: HDETLQSVLS EIRLNLKTGE STRRPVISEQ VNLEAGMVNR NLLGRKTRYA YLALTEPWPK VSGFAKVDLS TGEIRKYIYG EGKYGGEPLF LPSGDGEEDG
601: GYIMVFVHDE EKVKSELQLI NAVNMKLEAT VTLPSRVPYG FHGTFISKED LSKQALC

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.