Factsheet for Zm00001d019813_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, vacuole
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012529_P001
Zm00001d043095_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	Zm00001d012529_P001	AT5G17790.1	15340011
AT1G30100.1	Zm00001d043095_P004	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009286_P001	Maize	plastid	85.71	64.29
Zm00001d033377_P001	Maize	plastid	86.77	57.75
Zm00001d000157_P001	Maize	cytosol	24.87	44.76
Zm00001d000095_P001	Maize	cytosol	26.98	31.1
KRH45171	Soybean	plastid	24.87	28.48
CDX98457	Canola	plastid	32.28	19.37
Zm00001d013689_P001	Maize	plastid	58.2	18.3
Zm00001d033222_P001	Maize	extracellular	55.03	17.22
Zm00001d018819_P001	Maize	plastid	43.92	14.49
Zm00001d041319_P001	Maize	plastid	44.97	14.07
Zm00001d007876_P001	Maize	plastid	42.33	13.91
Zm00001d031086_P001	Maize	plastid	40.74	13.53
GSMUA_Achr4P22870_001	Banana	plastid	42.33	13.31
GSMUA_Achr5P02570_001	Banana	plastid	41.8	12.95
GSMUA_Achr4P31460_001	Banana	plastid	41.27	12.94
CDY39117	Canola	mitochondrion	35.98	12.3
GSMUA_Achr7P01250_001	Banana	plastid	39.15	12.27
GSMUA_Achr6P31180_001	Banana	plastid	39.15	12.27
GSMUA_Achr2P12950_001	Banana	plastid	37.04	11.88
Bra021558.1-P	Field mustard	plastid	37.57	11.87
CDY33218	Canola	plastid	37.57	11.87
CDX98455	Canola	plastid	36.51	11.56
CDX97576	Canola	plastid	35.98	11.39
Bra027336.1-P	Field mustard	plastid	35.98	11.39
AT3G14440.1	Thale cress	plastid	35.98	11.35
VIT_10s0003g03750.t01	Wine grape	plastid	35.98	11.24
AT4G18350.1	Thale cress	cytosol, plastid	34.39	11.15
Zm00001d034075_P001	Maize	cytosol	2.12	11.11
AT1G30100.1	Thale cress	plastid	33.86	10.87
CDX78842	Canola	plastid	33.33	10.84
CDX99475	Canola	plastid	33.33	10.84
Bra013298.1-P	Field mustard	plastid	33.33	10.84
VIT_19s0093g00550.t01	Wine grape	plastid	34.92	10.84
CDY55629	Canola	cytosol, plastid	33.33	10.81
CDY01534	Canola	cytosol, plastid	33.33	10.81
CDY61838	Canola	plastid	33.33	10.7
PGSC0003DMT400039054	Potato	plastid	32.8	10.69
Solyc07g056570.1.1	Tomato	plastid	33.86	10.58
Bra032359.1-P	Field mustard	plastid	32.8	10.54
CDY26294	Canola	plastid	32.8	10.53
Bra008358.1-P	Field mustard	plastid	32.28	10.39
Solyc08g016720.1.1	Tomato	plastid	31.75	10.33
CDX88443	Canola	plastid	32.8	10.3
CDY52448	Canola	plastid	32.8	10.3
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	27.51	10.28
AT1G78390.1	Thale cress	cytosol, plastid	35.45	10.2
Bra035033.1-P	Field mustard	plastid	32.28	10.13
Zm00001d035724_P001	Maize	plastid	33.33	9.92
Zm00001d027690_P001	Maize	cytosol	3.7	9.09
Zm00001d008638_P001	Maize	cytosol	3.7	8.54
Zm00001d048373_P002	Maize	cytosol, plasma membrane	23.28	8.0
Zm00001d051556_P001	Maize	plastid	24.87	7.37
Zm00001d017766_P001	Maize	plastid	24.34	7.2
Bra012603.1-P	Field mustard	cytosol	12.7	5.43
Zm00001d027592_P001	Maize	mitochondrion	12.17	5.4
Zm00001d020069_P002	Maize	plastid	15.87	5.37
Zm00001d023690_P001	Maize	cytosol	3.7	5.34
Zm00001d023458_P001	Maize	cytosol	3.7	4.96
Zm00001d045232_P001	Maize	plastid	13.76	4.24
Zm00001d042076_P001	Maize	cytosol, plastid	8.99	4.05
CDX82482	Canola	cytosol	6.35	3.03
Bra001552.1-P	Field mustard	cytosol	6.35	3.03
CDY57471	Canola	cytosol	5.82	2.78
CDX98456	Canola	cytosol	3.17	2.35
Zm00001d022623_P001	Maize	cytosol	3.17	1.61

Protein Annotations

EnsemblPlants:Zm00001d019813_P001	EnsemblPlants:Zm00001d019813_T001	EnsemblPlantsGene:Zm00001d019813	EntrezGene:103632443	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF49	PFAM:PF03055	ProteinID:ONM53753.1
SEG:seg	UniParc:UPI0004DEAA5D	UniProt:A0A1D6I0E9	MapMan:35.1	:	:

Description

9-cis-epoxycarotenoid dioxygenase NCED3 chloroplastic

Coordinates

chr7:+:64605343..64606179

Molecular Weight (calculated)

19834.9 Da

IEP (calculated)

11.017

GRAVY (calculated)

-0.202

Length

189 amino acids

Sequence
(BLAST)

001: MPMAASVLLA APATSPPLTW QRWAPLLAPS KKPTAIAVPR HAAAPRKSDG GGKKQLNLFQ RAPAAALDAF EEGFVANVLE RAHGQPSTAN PAVQIAGNVV
101: PIGERLPVRR LPVSGRIPPF ISGIYARNDV NPCFDPVAGH HLFDGSASKL QPATLELCSV APLGPQPRQQ NHPHRSPPPS PPAVQQAAA

Best Arabidopsis Sequence Match ( AT1G78390.1 )
(BLAST)

001: MTIITIISGM YIYSLLSQDA HHSQYGQNTN LVLKKPIPKP QTAAFNQEST MASTTLLPST STQFLDRTFS TSSSSSRPKL QSLSFSSTLR NKKLVVPCYV
101: SSSVNKKSSV SSSLQSPTFK PPSWKKLCND VTNLIPKTTN QNPKLNPVQR TAAMVLDAVE NAMISHERRR HPHPKTADPA VQIAGNFFPV PEKPVVHNLP
201: VTGTVPECIQ GVYVRNGANP LHKPVSGHHL FDGDGMVHAV RFDNGSVSYA CRFTETNRLV QERECGRPVF PKAIGELHGH LGIAKLMLFN TRGLFGLVDP
301: TGGLGVANAG LVYFNGHLLA MSEDDLPYHV KVTQTGDLET SGRYDFDGQL KSTMIAHPKI DPETRELFAL SYDVVSKPYL KYFRFTSDGE KSPDVEIPLD
401: QPTMIHDFAI TENFVVIPDQ QVVFRLPEMI RGGSPVVYDE KKKSRFGILN KNAKDASSIQ WIEVPDCFCF HLWNSWEEPE TDEVVVIGSC MTPPDSIFNE
501: HDETLQSVLS EIRLNLKTGE STRRPVISEQ VNLEAGMVNR NLLGRKTRYA YLALTEPWPK VSGFAKVDLS TGEIRKYIYG EGKYGGEPLF LPSGDGEEDG
601: GYIMVFVHDE EKVKSELQLI NAVNMKLEAT VTLPSRVPYG FHGTFISKED LSKQALC

Arabidopsis Description

NCED99-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.