Factsheet for Zm00001d007876_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012529_P001
Zm00001d043095_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	Zm00001d012529_P001	AT5G17790.1	15340011
AT1G30100.1	Zm00001d043095_P004	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018819_P001	Maize	plastid	95.13	95.46
OQU88453	Sorghum	plastid	91.83	92.15
TraesCS2D01G251600.1	Wheat	plastid	80.0	79.04
Os07t0154100-01	Rice	plastid	79.3	78.35
TraesCS2B01G268400.1	Wheat	plastid	79.48	76.68
Zm00001d027690_P001	Maize	cytosol	10.26	76.62
TraesCS2A01G250600.1	Wheat	plastid	78.61	76.22
Zm00001d008638_P001	Maize	cytosol	10.78	75.61
Zm00001d023690_P001	Maize	cytosol	16.17	70.99
CDY57471	Canola	cytosol	46.78	67.93
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	59.65	67.79
CDX82482	Canola	cytosol	46.61	67.68
Bra001552.1-P	Field mustard	cytosol	46.61	67.68
Zm00001d042076_P001	Maize	cytosol, plastid	48.87	66.9
Zm00001d031086_P001	Maize	plastid	64.87	65.55
CDX98456	Canola	cytosol	29.04	65.49
Zm00001d033222_P001	Maize	extracellular	68.7	65.4
Zm00001d013689_P001	Maize	plastid	67.83	64.89
Zm00001d022623_P001	Maize	cytosol	41.39	63.81
Zm00001d000095_P001	Maize	cytosol	18.09	63.41
GSMUA_Achr6P31180_001	Banana	plastid	66.43	63.35
GSMUA_Achr2P12950_001	Banana	plastid	64.87	63.33
Bra012603.1-P	Field mustard	cytosol	48.52	63.12
Zm00001d000157_P001	Maize	cytosol	11.48	62.86
CDY39117	Canola	mitochondrion	60.35	62.75
Zm00001d041319_P001	Maize	plastid	65.91	62.75
GSMUA_Achr4P22870_001	Banana	plastid	65.22	62.4
GSMUA_Achr7P01250_001	Banana	plastid	65.22	62.19
GSMUA_Achr5P02570_001	Banana	plastid	65.91	62.13
GSMUA_Achr4P31460_001	Banana	plastid	62.78	59.87
VIT_19s0093g00550.t01	Wine grape	plastid	62.61	59.11
CDY33218	Canola	plastid	61.22	58.86
PGSC0003DMT400039054	Potato	plastid	59.3	58.79
Bra021558.1-P	Field mustard	plastid	60.87	58.53
Solyc07g056570.1.1	Tomato	plastid	61.57	58.51
Bra027336.1-P	Field mustard	plastid	60.7	58.46
Solyc08g016720.1.1	Tomato	plastid	58.96	58.35
VIT_10s0003g03750.t01	Wine grape	plastid	61.39	58.35
CDX98455	Canola	plastid	60.52	58.29
CDX97576	Canola	plastid	60.52	58.29
CDY52448	Canola	plastid	60.17	57.48
AT3G14440.1	Thale cress	plastid	59.83	57.43
Bra035033.1-P	Field mustard	plastid	60.0	57.31
Bra008358.1-P	Field mustard	plastid	58.43	57.24
AT1G30100.1	Thale cress	plastid	58.43	57.05
Bra032359.1-P	Field mustard	plastid	58.26	56.97
CDY26294	Canola	plastid	58.26	56.88
CDX88443	Canola	plastid	59.48	56.81
CDY61838	Canola	plastid	58.09	56.71
Bra013298.1-P	Field mustard	plastid	56.52	55.94
CDX99475	Canola	plastid	56.35	55.77
CDX78842	Canola	plastid	56.17	55.59
AT4G18350.1	Thale cress	cytosol, plastid	56.35	55.57
CDY55629	Canola	cytosol, plastid	56.17	55.4
CDY01534	Canola	cytosol, plastid	56.17	55.4
AT1G78390.1	Thale cress	cytosol, plastid	60.52	52.97
CDX98457	Canola	plastid	28.17	51.43
Zm00001d023458_P001	Maize	cytosol	12.35	50.35
KRH45171	Soybean	plastid	12.35	43.03
Zm00001d019813_P001	Maize	plastid	13.91	42.33
Zm00001d034075_P001	Maize	cytosol	2.43	38.89
Zm00001d035724_P001	Maize	plastid	41.57	37.64
Zm00001d048373_P002	Maize	cytosol, plasma membrane	35.13	36.73
Zm00001d051556_P001	Maize	plastid	39.48	35.58
Zm00001d017766_P001	Maize	plastid	39.3	35.37
Zm00001d009286_P001	Maize	plastid	14.26	32.54
Zm00001d033377_P001	Maize	plastid	14.61	29.58
Zm00001d027592_P001	Maize	mitochondrion	18.78	25.35
Zm00001d020069_P002	Maize	plastid	24.17	24.87
Zm00001d045232_P001	Maize	plastid	22.96	21.53

Protein Annotations

EnsemblPlants:Zm00001d007876_P001	EnsemblPlants:Zm00001d007876_T001	EnsemblPlantsGene:Zm00001d007876	EntrezGene:103648268	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF49	PFAM:PF03055	ProteinID:ONM27776.1
SEG:seg	UniParc:UPI0002218961	UniProt:A0A1D6F9F2	MapMan:11.1.1.4	:	:

Description

nine-cis-epoxycarotenoid dioxygenase4 nine-cis-epoxycarotenoid dioxygenase4

Coordinates

chr2:-:241535851..241537578

Molecular Weight (calculated)

62036.9 Da

IEP (calculated)

7.087

GRAVY (calculated)

-0.236

Length

575 amino acids

Sequence
(BLAST)

001: MASSSISAPA PPAAPAPGRP KKQSQLNPST GKTRTPVPAR PMRAAPTPAR HEAAAKWNPL QRLAAAALDA LEEGLVAGVL ERAHPLPRTA DPAVQIAGNY
101: APVGERPPSG ELPVSGRVPA CLDGVYVRNG ANPLHAPRAG HHLFDGDGML HAVRLRGGRA QSYACRFTET ARLRQERALG RAVFPKAIGE LHGHSGVARL
201: LLFGARSLCG VLDASQGIGV ANAGLVYHNN RLLAMSEDDL PYHVRVTADG DLETAGRYDF GGQLDAAMIA HPKLDPATGE LFALSYNVVS RPFLKYFYFT
301: ADGRKSPDVE IPVDAPTMMH DFAVTENHAI IPDQQIVFKL QEMVLGGSPV VYDRNKTARF GVLPKRATDA SRLQWVDVPD CFCFHLWNAW EDEATGEIVV
401: IGSCMTPADA VFNESAGEES FRSVLSEIRL DPRTGTSSRR AVLSDADQVN LEAGMVNRQL LGRKTRYAYL AIAEPWPKVS GFAKVDLEAG TVEKFVYGEG
501: RYGGEPCFVP RPDAPAAEDD GYVLCYVHDE GRGASEMLVV NARDMRAEAA VKLPSRVPYG LHGTFIAGKE LQRQA

Best Arabidopsis Sequence Match ( AT1G78390.1 )
(BLAST)

001: MTIITIISGM YIYSLLSQDA HHSQYGQNTN LVLKKPIPKP QTAAFNQEST MASTTLLPST STQFLDRTFS TSSSSSRPKL QSLSFSSTLR NKKLVVPCYV
101: SSSVNKKSSV SSSLQSPTFK PPSWKKLCND VTNLIPKTTN QNPKLNPVQR TAAMVLDAVE NAMISHERRR HPHPKTADPA VQIAGNFFPV PEKPVVHNLP
201: VTGTVPECIQ GVYVRNGANP LHKPVSGHHL FDGDGMVHAV RFDNGSVSYA CRFTETNRLV QERECGRPVF PKAIGELHGH LGIAKLMLFN TRGLFGLVDP
301: TGGLGVANAG LVYFNGHLLA MSEDDLPYHV KVTQTGDLET SGRYDFDGQL KSTMIAHPKI DPETRELFAL SYDVVSKPYL KYFRFTSDGE KSPDVEIPLD
401: QPTMIHDFAI TENFVVIPDQ QVVFRLPEMI RGGSPVVYDE KKKSRFGILN KNAKDASSIQ WIEVPDCFCF HLWNSWEEPE TDEVVVIGSC MTPPDSIFNE
501: HDETLQSVLS EIRLNLKTGE STRRPVISEQ VNLEAGMVNR NLLGRKTRYA YLALTEPWPK VSGFAKVDLS TGEIRKYIYG EGKYGGEPLF LPSGDGEEDG
601: GYIMVFVHDE EKVKSELQLI NAVNMKLEAT VTLPSRVPYG FHGTFISKED LSKQALC

Arabidopsis Description

NCED99-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.