Factsheet for Zm00001d009286_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012529_P001
Zm00001d043095_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	Zm00001d012529_P001	AT5G17790.1	15340011
AT1G30100.1	Zm00001d043095_P004	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033377_P001	Maize	plastid	99.6	88.38
Zm00001d019813_P001	Maize	plastid	64.29	85.71
Zm00001d000157_P001	Maize	cytosol	19.05	45.71
Zm00001d000095_P001	Maize	cytosol	20.63	31.71
KRH45171	Soybean	plastid	19.84	30.3
CDX98457	Canola	plastid	26.98	21.59
Zm00001d013689_P001	Maize	plastid	45.24	18.97
Zm00001d033222_P001	Maize	extracellular	44.44	18.54
Zm00001d041319_P001	Maize	plastid	36.51	15.23
Zm00001d018819_P001	Maize	plastid	34.13	15.01
Zm00001d031086_P001	Maize	plastid	32.94	14.59
GSMUA_Achr4P31460_001	Banana	plastid	34.13	14.26
Zm00001d007876_P001	Maize	plastid	32.54	14.26
GSMUA_Achr5P02570_001	Banana	plastid	34.13	14.1
GSMUA_Achr4P22870_001	Banana	plastid	32.94	13.81
GSMUA_Achr7P01250_001	Banana	plastid	32.54	13.6
GSMUA_Achr6P31180_001	Banana	plastid	31.75	13.27
Bra021558.1-P	Field mustard	plastid	31.35	13.21
CDY33218	Canola	plastid	31.35	13.21
CDY39117	Canola	mitochondrion	28.97	13.2
AT3G14440.1	Thale cress	plastid	30.56	12.85
CDX98455	Canola	plastid	30.16	12.73
VIT_10s0003g03750.t01	Wine grape	plastid	30.56	12.73
Bra027336.1-P	Field mustard	plastid	29.76	12.56
CDX97576	Canola	plastid	29.76	12.56
GSMUA_Achr2P12950_001	Banana	plastid	28.97	12.39
CDX78842	Canola	plastid	27.78	12.05
Bra013298.1-P	Field mustard	plastid	27.78	12.05
AT4G18350.1	Thale cress	cytosol, plastid	27.78	12.01
CDX99475	Canola	plastid	27.38	11.88
CDY55629	Canola	cytosol, plastid	27.38	11.84
CDY01534	Canola	cytosol, plastid	27.38	11.84
VIT_19s0093g00550.t01	Wine grape	plastid	28.57	11.82
CDY61838	Canola	plastid	27.38	11.71
Solyc07g056570.1.1	Tomato	plastid	27.78	11.57
Bra032359.1-P	Field mustard	plastid	26.98	11.56
AT1G30100.1	Thale cress	plastid	26.98	11.54
CDY26294	Canola	plastid	26.98	11.54
PGSC0003DMT400039054	Potato	plastid	26.19	11.38
Bra008358.1-P	Field mustard	plastid	26.19	11.24
Solyc08g016720.1.1	Tomato	plastid	25.79	11.19
CDY52448	Canola	plastid	26.59	11.13
CDX88443	Canola	plastid	26.59	11.13
Zm00001d034075_P001	Maize	cytosol	1.59	11.11
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	22.22	11.07
Bra035033.1-P	Field mustard	plastid	26.19	10.96
Zm00001d035724_P001	Maize	plastid	27.38	10.87
AT1G78390.1	Thale cress	cytosol, plastid	27.78	10.65
Zm00001d027690_P001	Maize	cytosol	2.78	9.09
Zm00001d048373_P002	Maize	cytosol, plasma membrane	19.44	8.91
Zm00001d051556_P001	Maize	plastid	21.83	8.62
Zm00001d008638_P001	Maize	cytosol	2.78	8.54
Zm00001d017766_P001	Maize	plastid	21.03	8.29
Zm00001d027592_P001	Maize	mitochondrion	10.71	6.34
Zm00001d020069_P002	Maize	plastid	13.49	6.08
Zm00001d023458_P001	Maize	cytosol	3.17	5.67
Bra012603.1-P	Field mustard	cytosol	9.52	5.43
Zm00001d023690_P001	Maize	cytosol	2.78	5.34
Zm00001d045232_P001	Maize	plastid	10.71	4.4
Zm00001d042076_P001	Maize	cytosol, plastid	7.14	4.29
CDX82482	Canola	cytosol	4.76	3.03
Bra001552.1-P	Field mustard	cytosol	4.76	3.03
CDY57471	Canola	cytosol	4.37	2.78
CDX98456	Canola	cytosol	2.38	2.35
Zm00001d022623_P001	Maize	cytosol	2.38	1.61

Protein Annotations

EnsemblPlants:Zm00001d009286_P001	EnsemblPlants:Zm00001d009286_T001	EnsemblPlantsGene:Zm00001d009286	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213	GO:GO:0055114
InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF49	PFAM:PF03055	ProteinID:AQK91613.1	SEG:seg
SignalP:SignalP-noTM	UniParc:UPI0008444EA0	UniProt:A0A1D6FIJ1	MapMan:35.1	:	:

Description

9-cis-epoxycarotenoid dioxygenase NCED3 chloroplastic

Coordinates

chr8:-:52122143..52123234

Molecular Weight (calculated)

25956.9 Da

IEP (calculated)

11.383

GRAVY (calculated)

-0.217

Length

252 amino acids

Sequence
(BLAST)

001: MAASVLLAAP APLLAASHPR PTGEPAASRT VPASARFSSP ATADVGSRPA HLYLHTPAPV GRVQARASNS VRFSLHAAEC LQASFHADLP APSKKPTTIA
101: VPRHAAAPRK SGGGGKKQLN LFQRAAATAI DAFEEGFVAN VIERPHGQPS TADPAVQIAG NFAPIGERPP VRGLPVSGRI PPSISGIYAR NGVNPCFDPV
201: AGHHLFDGSA SKLQPATLEL CSVAPLGPQP RQRSRPHRSP PPSPPAVQQA AA

Best Arabidopsis Sequence Match ( AT3G14440.1 )
(BLAST)

001: MASFTATAAV SGRWLGGNHT QPPLSSSQSS DLSYCSSLPM ASRVTRKLNV SSALHTPPAL HFPKQSSNSP AIVVKPKAKE SNTKQMNLFQ RAAAAALDAA
101: EGFLVSHEKL HPLPKTADPS VQIAGNFAPV NEQPVRRNLP VVGKLPDSIK GVYVRNGANP LHEPVTGHHF FDGDGMVHAV KFEHGSASYA CRFTQTNRFV
201: QERQLGRPVF PKAIGELHGH TGIARLMLFY ARAAAGIVDP AHGTGVANAG LVYFNGRLLA MSEDDLPYQV QITPNGDLKT VGRFDFDGQL ESTMIAHPKV
301: DPESGELFAL SYDVVSKPYL KYFRFSPDGT KSPDVEIQLD QPTMMHDFAI TENFVVVPDQ QVVFKLPEMI RGGSPVVYDK NKVARFGILD KYAEDSSNIK
401: WIDAPDCFCF HLWNAWEEPE TDEVVVIGSC MTPPDSIFNE SDENLKSVLS EIRLNLKTGE STRRPIISNE DQQVNLEAGM VNRNMLGRKT KFAYLALAEP
501: WPKVSGFAKV DLTTGEVKKH LYGDNRYGGE PLFLPGEGGE EDEGYILCFV HDEKTWKSEL QIVNAVSLEV EATVKLPSRV PYGFHGTFIG ADDLAKQVV

Arabidopsis Description

NCED39-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LRR7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.