Factsheet for Zm00001d022623_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012529_P001
Zm00001d043095_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	Zm00001d012529_P001	AT5G17790.1	15340011
AT1G30100.1	Zm00001d043095_P004	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98456	Canola	cytosol	43.7	63.92
Zm00001d042076_P001	Maize	cytosol, plastid	71.31	63.33
Zm00001d023458_P001	Maize	cytosol	17.43	46.1
Zm00001d018819_P001	Maize	plastid	64.61	42.06
Zm00001d007876_P001	Maize	plastid	63.81	41.39
OQU88453	Sorghum	plastid	62.73	40.84
CDY57471	Canola	cytosol	39.14	36.87
Bra001552.1-P	Field mustard	cytosol	38.87	36.62
CDX82482	Canola	cytosol	38.87	36.62
TraesCS2D01G251600.1	Wheat	plastid	55.5	35.57
TraesCS2A01G250600.1	Wheat	plastid	55.76	35.08
Os07t0154100-01	Rice	plastid	53.89	34.54
TraesCS2B01G268400.1	Wheat	plastid	54.69	34.23
Bra012603.1-P	Field mustard	cytosol	39.68	33.48
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	44.5	32.81
GSMUA_Achr5P02570_001	Banana	plastid	49.87	30.49
GSMUA_Achr4P22870_001	Banana	plastid	49.06	30.45
CDY39117	Canola	mitochondrion	45.04	30.38
GSMUA_Achr2P12950_001	Banana	plastid	47.72	30.22
Zm00001d031086_P001	Maize	plastid	45.84	30.05
Zm00001d013689_P001	Maize	plastid	48.26	29.95
Zm00001d033222_P001	Maize	extracellular	48.26	29.8
GSMUA_Achr7P01250_001	Banana	plastid	47.45	29.35
GSMUA_Achr6P31180_001	Banana	plastid	47.45	29.35
GSMUA_Achr4P31460_001	Banana	plastid	45.84	28.36
CDY33218	Canola	plastid	45.31	28.26
Zm00001d041319_P001	Maize	plastid	45.04	27.81
Zm00001d034075_P001	Maize	cytosol	2.68	27.78
Bra021558.1-P	Field mustard	plastid	44.24	27.59
PGSC0003DMT400039054	Potato	plastid	42.9	27.59
Solyc08g016720.1.1	Tomato	plastid	42.63	27.37
Bra027336.1-P	Field mustard	plastid	43.7	27.3
CDX98455	Canola	plastid	43.7	27.3
CDX97576	Canola	plastid	43.43	27.14
Solyc07g056570.1.1	Tomato	plastid	43.97	27.11
AT3G14440.1	Thale cress	plastid	43.16	26.88
VIT_19s0093g00550.t01	Wine grape	plastid	43.7	26.77
VIT_10s0003g03750.t01	Wine grape	plastid	43.16	26.61
Bra032359.1-P	Field mustard	plastid	41.55	26.36
CDY26294	Canola	plastid	41.55	26.32
AT1G30100.1	Thale cress	plastid	41.29	26.15
Bra035033.1-P	Field mustard	plastid	42.09	26.08
CDY52448	Canola	plastid	42.09	26.08
Bra008358.1-P	Field mustard	plastid	41.02	26.06
CDY61838	Canola	plastid	41.02	25.98
CDX88443	Canola	plastid	41.82	25.91
CDX78842	Canola	plastid	39.68	25.47
CDX99475	Canola	plastid	39.68	25.47
Bra013298.1-P	Field mustard	plastid	39.68	25.47
AT4G18350.1	Thale cress	cytosol, plastid	39.68	25.39
CDY01534	Canola	cytosol, plastid	39.41	25.21
CDY55629	Canola	cytosol, plastid	39.41	25.21
AT1G78390.1	Thale cress	cytosol, plastid	41.55	23.59
Zm00001d023690_P001	Maize	cytosol	8.04	22.9
Zm00001d048373_P002	Maize	cytosol, plasma membrane	24.66	16.73
Zm00001d051556_P001	Maize	plastid	28.15	16.46
Zm00001d017766_P001	Maize	plastid	27.88	16.28
Zm00001d027592_P001	Maize	mitochondrion	17.16	15.02
Zm00001d035724_P001	Maize	plastid	23.06	13.54
Zm00001d020069_P002	Maize	plastid	16.09	10.73
Zm00001d045232_P001	Maize	plastid	16.35	9.95
Zm00001d019813_P001	Maize	plastid	1.61	3.17
Zm00001d009286_P001	Maize	plastid	1.61	2.38
Zm00001d033377_P001	Maize	plastid	1.61	2.11
Zm00001d000095_P001	Maize	cytosol	0.54	1.22
KRH45171	Soybean	plastid	0.27	0.61
Zm00001d000157_P001	Maize	cytosol	0.0	0.0
CDX98457	Canola	plastid	0.0	0.0
Zm00001d008638_P001	Maize	cytosol	0.0	0.0
Zm00001d027690_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.90	MapMan:50.1.12	UniProt:A0A1D6IPX2	InterPro:Carotenoid_Oase	InterPro:ENTH_VHS	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:IPR002014	InterPro:IPR008942	ProteinID:ONM61280.1	PFAM:PF03055	PFscan:PS50179
PANTHER:PTHR10543	PANTHER:PTHR10543:SF49	SUPFAM:SSF48464	UniParc:UPI0008435752	InterPro:VHS_dom	EnsemblPlantsGene:Zm00001d022623
EnsemblPlants:Zm00001d022623_P001	EnsemblPlants:Zm00001d022623_T001	:	:	:	:

Description

nine-cis-epoxycarotenoid dioxygenase7 nine-cis-epoxycarotenoid dioxygenase7

Coordinates

chr7:-:181400407..181408261

Molecular Weight (calculated)

41497.4 Da

IEP (calculated)

6.291

GRAVY (calculated)

-0.247

Length

373 amino acids

Sequence
(BLAST)

001: MMHDFAVTEN HAIIPDQQIV FKLQEMVLGG SPVVYDRNKT ARFGVLPKRA TDVSRLRWVD VPDCFCFHLW NAWEDEATGE IVVIGSCMTP ADAVFNESAA
101: GEESFRSVLS EIRLDPRTGT SSRRAVLSDA DQVNLEAGMV NRQLLGRRTR YAYLAIAEPW PKVSGFAKVD LEAGTVEKFI YGDGRYGGEP CFVPHLNAPA
201: GAAEDDGYVL CYVHDEGRGA SEMLVVNARD MRAEAAVKLS GRVSYGLHGT FIASKNICSL QSGTALRVDA IKDVVKALKK RIGHRNPKVQ LLALSIYSSI
301: LKDSYICPLP ESVVPFDVYG VEDFKIEDTN VHNPTTHKFQ EDPKSDPRHC KLQHEYEVFD LKTVPQNSRF TIN

Best Arabidopsis Sequence Match ( AT1G30100.1 )
(BLAST)

001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA

Arabidopsis Description

NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.