Factsheet for AT4G18350.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012603.1-P	Field mustard	cytosol	70.5	92.99
CDY55629	Canola	cytosol, plastid	90.57	90.57
CDY01534	Canola	cytosol, plastid	90.22	90.22
Bra013298.1-P	Field mustard	plastid	87.31	87.61
CDX99475	Canola	plastid	87.14	87.44
CDX78842	Canola	plastid	85.76	86.06
Zm00001d023690_P001	Maize	cytosol	15.78	70.23
Zm00001d027690_P001	Maize	cytosol	9.26	70.13
Zm00001d008638_P001	Maize	cytosol	9.78	69.51
AT1G30100.1	Thale cress	plastid	66.9	66.21
PGSC0003DMT400039054	Potato	plastid	64.84	65.17
Solyc08g016720.1.1	Tomato	plastid	64.49	64.72
VIT_10s0003g03750.t01	Wine grape	plastid	64.84	62.48
Os12t0617400-01	Rice	cytosol	30.19	62.19
AT3G14440.1	Thale cress	plastid	63.12	61.44
KRH58642	Soybean	plastid	61.58	61.05
KRH42549	Soybean	plastid	60.72	60.1
GSMUA_Achr4P22870_001	Banana	plastid	61.58	59.73
Zm00001d031086_P001	Maize	plastid	57.98	59.4
GSMUA_Achr6P31180_001	Banana	plastid	60.89	58.87
TraesCS5A01G374000.1	Wheat	plastid	59.52	58.71
TraesCS5D01G383500.1	Wheat	plastid	59.86	58.66
TraesCS5B01G375900.1	Wheat	plastid	59.52	58.32
GSMUA_Achr7P01250_001	Banana	plastid	60.03	58.04
Zm00001d000095_P001	Maize	cytosol	16.3	57.93
GSMUA_Achr2P12950_001	Banana	plastid	58.49	57.89
Zm00001d033222_P001	Maize	extracellular	59.86	57.78
GSMUA_Achr4P31460_001	Banana	plastid	59.69	57.71
GSMUA_Achr5P02570_001	Banana	plastid	60.38	57.7
Os03t0645900-00	Rice	plastid	59.86	57.4
HORVU5Hr1G008050.1	Barley	plastid	59.52	57.17
EER93751	Sorghum	plastid	59.86	57.12
OQU88453	Sorghum	plastid	56.09	57.07
Zm00001d013689_P001	Maize	plastid	58.32	56.57
Zm00001d018819_P001	Maize	plastid	55.57	56.54
TraesCS5B01G029300.1	Wheat	plastid	59.35	56.35
Zm00001d007876_P001	Maize	plastid	55.57	56.35
AT1G78390.1	Thale cress	cytosol, plastid	63.46	56.32
HORVU5Hr1G054970.1	Barley	cytosol	58.66	56.25
Os07t0154100-01	Rice	plastid	56.09	56.19
TraesCS5D01G038800.1	Wheat	plastid	59.01	55.94
Zm00001d041319_P001	Maize	plastid	57.8	55.79
TraesCS2D01G251600.1	Wheat	plastid	54.72	54.81
TraesCS2B01G268400.1	Wheat	plastid	55.23	54.03
HORVU5Hr1G092850.2	Barley	plastid	59.52	53.88
HORVU5Hr1G044510.1	Barley	cytosol	55.23	53.67
TraesCS2A01G250600.1	Wheat	plastid	53.69	52.78
Zm00001d000157_P001	Maize	cytosol	9.43	52.38
AT3G24220.1	Thale cress	plastid	50.94	51.47
Zm00001d023458_P001	Maize	cytosol	10.98	45.39
Zm00001d042076_P001	Maize	cytosol, plastid	31.9	44.29
Zm00001d022623_P001	Maize	cytosol	25.39	39.68
Zm00001d035724_P001	Maize	plastid	39.45	36.22
Zm00001d019813_P001	Maize	plastid	11.15	34.39
AT3G63520.1	Thale cress	cytosol	30.7	33.27
AT4G19170.1	Thale cress	plastid	33.1	32.44
Zm00001d009286_P001	Maize	plastid	12.01	27.78
Zm00001d033377_P001	Maize	plastid	12.18	25.0
Zm00001d027592_P001	Maize	mitochondrion	18.01	24.65

Protein Annotations

MapMan:11.1.1.4	EntrezGene:827562	ProteinID:AEE84030.1	ArrayExpress:AT4G18350	EnsemblPlantsGene:AT4G18350	RefSeq:AT4G18350
TAIR:AT4G18350	RefSeq:AT4G18350-TAIR-G	EnsemblPlants:AT4G18350.1	TAIR:AT4G18350.1	EMBL:BT030365	ProteinID:CAA16715.1
ProteinID:CAB78837.1	InterPro:Carotenoid_Oase	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009688	GO:GO:0009987	GO:GO:0016020	GO:GO:0016491	GO:GO:0016702	GO:GO:0045549
GO:GO:0046872	GO:GO:0051213	GO:GO:0055114	Symbol:NCED2	RefSeq:NP_193569.1	UniProt:O49505
PFAM:PF03055	PO:PO:0000025	PO:PO:0000258	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017
PO:PO:0006203	PO:PO:0007616	PO:PO:0009010	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031
PO:PO:0009046	PO:PO:0025195	PO:PO:0025281	PANTHER:PTHR10543	PANTHER:PTHR10543:SF42	UniParc:UPI000003BCE2
SEG:seg	:	:	:	:	:

Description

NCED29-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O49505]

Coordinates

chr4:+:10142255..10144646

Molecular Weight (calculated)

65070.3 Da

IEP (calculated)

7.022

GRAVY (calculated)

-0.268

Length

583 amino acids

Sequence
(BLAST)

001: MVSLLTMPMS GGIKTWPQAQ IDLGFRPIKR QPKVIKCTVQ IDVTELTKKR QLFTPRTTAT PPQHNPLRLN IFQKAAAIAI DAAERALISH EQDSPLPKTA
101: DPRVQIAGNY SPVPESSVRR NLTVEGTIPD CIDGVYIRNG ANPMFEPTAG HHLFDGDGMV HAVKITNGSA SYACRFTKTE RLVQEKRLGR PVFPKAIGEL
201: HGHSGIARLM LFYARGLCGL INNQNGVGVA NAGLVYFNNR LLAMSEDDLP YQLKITQTGD LQTVGRYDFD GQLKSAMIAH PKLDPVTKEL HALSYDVVKK
301: PYLKYFRFSP DGVKSPELEI PLETPTMIHD FAITENFVVI PDQQVVFKLG EMISGKSPVV FDGEKVSRLG IMPKDATEAS QIIWVNSPET FCFHLWNAWE
401: SPETEEIVVI GSCMSPADSI FNERDESLRS VLSEIRINLR TRKTTRRSLL VNEDVNLEIG MVNRNRLGRK TRFAFLAIAY PWPKVSGFAK VDLCTGEMKK
501: YIYGGEKYGG EPFFLPGNSG NGEENEDDGY IFCHVHDEET KTSELQIINA VNLKLEATIK LPSRVPYGFH GTFVDSNELV DQL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.