Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d012529_P001 | |
| Zm00001d043095_P004 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G30100.1 | Zm00001d012529_P001 | AT5G17790.1 | 15340011 |
| AT1G30100.1 | Zm00001d043095_P004 | AT5G17790.1 | 15340011 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008638_P001 | Maize | cytosol | 59.54 | 95.12 |
| Zm00001d027690_P001 | Maize | cytosol | 54.96 | 93.51 |
| Bra001552.1-P | Field mustard | cytosol | 67.94 | 22.47 |
| CDX82482 | Canola | cytosol | 67.94 | 22.47 |
| CDY57471 | Canola | cytosol | 66.41 | 21.97 |
| Bra012603.1-P | Field mustard | cytosol | 70.23 | 20.81 |
| Zm00001d013689_P001 | Maize | plastid | 93.89 | 20.47 |
| Zm00001d033222_P001 | Maize | extracellular | 88.55 | 19.21 |
| EER93751 | Sorghum | plastid | 87.02 | 18.66 |
| TraesCS5A01G374000.1 | Wheat | plastid | 83.97 | 18.61 |
| TraesCS5D01G383500.1 | Wheat | plastid | 83.97 | 18.49 |
| TraesCS5B01G375900.1 | Wheat | plastid | 83.97 | 18.49 |
| HORVU5Hr1G044510.1 | Barley | cytosol | 83.97 | 18.33 |
| HORVU5Hr1G054970.1 | Barley | cytosol | 83.97 | 18.09 |
| Zm00001d031086_P001 | Maize | plastid | 77.86 | 17.93 |
| Zm00001d041319_P001 | Maize | plastid | 80.92 | 17.55 |
| HORVU5Hr1G092850.2 | Barley | plastid | 83.97 | 17.08 |
| PGSC0003DMT400071048 | Potato | cytosol, mitochondrion | 64.89 | 16.8 |
| CDX78842 | Canola | plastid | 73.28 | 16.52 |
| CDY39117 | Canola | mitochondrion | 69.47 | 16.46 |
| Bra013298.1-P | Field mustard | plastid | 71.76 | 16.18 |
| Zm00001d007876_P001 | Maize | plastid | 70.99 | 16.17 |
| GSMUA_Achr2P12950_001 | Banana | plastid | 72.52 | 16.13 |
| Zm00001d018819_P001 | Maize | plastid | 70.23 | 16.06 |
| CDX99475 | Canola | plastid | 70.99 | 16.01 |
| CDY52448 | Canola | plastid | 73.28 | 15.95 |
| Bra035033.1-P | Field mustard | plastid | 73.28 | 15.95 |
| GSMUA_Achr7P01250_001 | Banana | plastid | 73.28 | 15.92 |
| CDX88443 | Canola | plastid | 72.52 | 15.78 |
| AT4G18350.1 | Thale cress | cytosol, plastid | 70.23 | 15.78 |
| GSMUA_Achr6P31180_001 | Banana | plastid | 72.52 | 15.75 |
| CDY55629 | Canola | cytosol, plastid | 69.47 | 15.61 |
| Bra008358.1-P | Field mustard | plastid | 69.47 | 15.5 |
| Bra032359.1-P | Field mustard | plastid | 69.47 | 15.48 |
| GSMUA_Achr4P22870_001 | Banana | plastid | 70.99 | 15.47 |
| CDY61838 | Canola | plastid | 69.47 | 15.45 |
| CDY26294 | Canola | plastid | 69.47 | 15.45 |
| CDY01534 | Canola | cytosol, plastid | 68.7 | 15.44 |
| GSMUA_Achr5P02570_001 | Banana | plastid | 71.76 | 15.41 |
| Bra027336.1-P | Field mustard | plastid | 69.47 | 15.24 |
| CDX97576 | Canola | plastid | 69.47 | 15.24 |
| Bra021558.1-P | Field mustard | plastid | 69.47 | 15.22 |
| AT3G14440.1 | Thale cress | plastid | 69.47 | 15.19 |
| Solyc08g016720.1.1 | Tomato | plastid | 67.18 | 15.15 |
| AT1G30100.1 | Thale cress | plastid | 67.94 | 15.11 |
| CDX98455 | Canola | plastid | 68.7 | 15.08 |
| CDY33218 | Canola | plastid | 68.7 | 15.05 |
| PGSC0003DMT400039054 | Potato | plastid | 66.41 | 15.0 |
| GSMUA_Achr4P31460_001 | Banana | plastid | 68.7 | 14.93 |
| VIT_10s0003g03750.t01 | Wine grape | plastid | 67.94 | 14.71 |
| VIT_19s0093g00550.t01 | Wine grape | plastid | 67.94 | 14.61 |
| Solyc07g056570.1.1 | Tomato | plastid | 66.41 | 14.38 |
| Zm00001d035724_P001 | Maize | plastid | 69.47 | 14.33 |
| AT1G78390.1 | Thale cress | cytosol, plastid | 71.76 | 14.31 |
| CDX98457 | Canola | plastid | 30.53 | 12.7 |
| CDX98456 | Canola | cytosol | 24.43 | 12.55 |
| Zm00001d042076_P001 | Maize | cytosol, plastid | 38.93 | 12.14 |
| Zm00001d048373_P002 | Maize | cytosol, plasma membrane | 38.17 | 9.09 |
| Zm00001d051556_P001 | Maize | plastid | 42.75 | 8.78 |
| Zm00001d017766_P001 | Maize | plastid | 41.98 | 8.61 |
| Zm00001d022623_P001 | Maize | cytosol | 22.9 | 8.04 |
| Zm00001d020069_P002 | Maize | plastid | 27.48 | 6.44 |
| Zm00001d027592_P001 | Maize | mitochondrion | 19.85 | 6.1 |
| Zm00001d000095_P001 | Maize | cytosol | 6.11 | 4.88 |
| Zm00001d045232_P001 | Maize | plastid | 21.37 | 4.57 |
| Zm00001d019813_P001 | Maize | plastid | 5.34 | 3.7 |
| Zm00001d009286_P001 | Maize | plastid | 5.34 | 2.78 |
| Zm00001d033377_P001 | Maize | plastid | 5.34 | 2.46 |
| Zm00001d023458_P001 | Maize | cytosol | 0.76 | 0.71 |
| KRH45171 | Soybean | plastid | 0.76 | 0.61 |
| Zm00001d034075_P001 | Maize | cytosol | 0.0 | 0.0 |
| Zm00001d000157_P001 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Zm00001d023690_P001 | EnsemblPlants:Zm00001d023690_T001 | EnsemblPlantsGene:Zm00001d023690 | EntrezGene:103642321 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0016702 | GO:GO:0046872 | GO:GO:0051213 |
| GO:GO:0055114 | InterPro:Carotenoid_Oase | PANTHER:PTHR10543 | PANTHER:PTHR10543:SF26 | PFAM:PF03055 | ProteinID:AQK39788.1 |
| UniParc:UPI0004DE8BC0 | UniProt:A0A1D6IUU2 | MapMan:50.1.12 | : | : | : |
Description
9-cis-epoxycarotenoid dioxygenase NCED3 chloroplastic
Coordinates
chr10:-:15582214..15582609
Molecular Weight (calculated)
14775.6 Da
IEP (calculated)
4.783
GRAVY (calculated)
-0.309
Length
131 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEDDLPYHV HVMDDGDLET VGRYDFDGQL GCPMIAHPKL DPATGELHAL SYEVVRRPYL KYFYFRPDGT KSDEVEIPLA QPTMIHDFSI TENLVVVPDH
101: RVVFKLQEML RGGSPVVLDR EKTSRIACGA G
101: RVVFKLQEML RGGSPVVLDR EKTSRIACGA G
001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
Arabidopsis Description
NCED5Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C6Z1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.