Factsheet for TraesCS5A01G374000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G339100.1
TraesCS3B01G370800.2
TraesCS3D01G332700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	TraesCS3A01G339100.1	AT5G17790.1	15340011
AT1G30100.1	TraesCS3B01G370800.2	AT5G17790.1	15340011
AT1G30100.1	TraesCS3D01G332700.1	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G375900.1	Wheat	plastid	97.97	97.31
TraesCS5D01G383500.1	Wheat	plastid	97.29	96.64
HORVU5Hr1G092850.2	Barley	plastid	97.63	89.6
HORVU5Hr1G054970.1	Barley	cytosol	88.16	85.69
HORVU5Hr1G044510.1	Barley	cytosol	85.28	84.0
Zm00001d023690_P001	Maize	cytosol	18.61	83.97
Zm00001d027690_P001	Maize	cytosol	10.83	83.12
Os03t0645900-00	Rice	plastid	84.94	82.57
EER93751	Sorghum	plastid	84.77	82.0
Zm00001d008638_P001	Maize	cytosol	11.34	81.71
Zm00001d033222_P001	Maize	extracellular	83.42	81.62
Zm00001d013689_P001	Maize	plastid	81.22	79.87
CDX82482	Canola	cytosol	47.72	71.21
Bra001552.1-P	Field mustard	cytosol	47.72	71.21
CDY57471	Canola	cytosol	47.04	70.2
CDX98456	Canola	cytosol	30.29	70.2
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	59.9	69.96
Bra012603.1-P	Field mustard	cytosol	51.44	68.78
CDY39117	Canola	mitochondrion	61.25	65.46
GSMUA_Achr4P22870_001	Banana	plastid	66.16	65.06
GSMUA_Achr2P12950_001	Banana	plastid	64.47	64.69
GSMUA_Achr5P02570_001	Banana	plastid	66.33	64.26
GSMUA_Achr7P01250_001	Banana	plastid	64.64	63.35
GSMUA_Achr6P31180_001	Banana	plastid	64.64	63.35
GSMUA_Achr4P31460_001	Banana	plastid	64.13	62.85
PGSC0003DMT400039054	Potato	plastid	61.42	62.59
Bra027336.1-P	Field mustard	plastid	63.11	62.48
Solyc08g016720.1.1	Tomato	plastid	61.25	62.31
Bra021558.1-P	Field mustard	plastid	62.94	62.21
CDX98455	Canola	plastid	62.77	62.14
TraesCS2A01G250600.1	Wheat	plastid	62.27	62.06
CDX97576	Canola	plastid	62.61	61.98
AT3G14440.1	Thale cress	plastid	62.44	61.6
VIT_19s0093g00550.t01	Wine grape	plastid	63.45	61.58
CDY33218	Canola	plastid	62.27	61.54
Bra032359.1-P	Field mustard	plastid	60.58	60.88
VIT_10s0003g03750.t01	Wine grape	plastid	62.27	60.83
CDX88443	Canola	plastid	61.93	60.8
AT1G30100.1	Thale cress	plastid	60.58	60.78
CDY52448	Canola	plastid	61.76	60.63
CDY26294	Canola	plastid	60.41	60.61
Solyc07g056570.1.1	Tomato	plastid	61.93	60.5
Bra035033.1-P	Field mustard	plastid	61.59	60.47
Bra013298.1-P	Field mustard	plastid	59.39	60.41
Bra008358.1-P	Field mustard	plastid	59.9	60.31
CDY61838	Canola	plastid	60.07	60.27
CDX78842	Canola	plastid	59.05	60.07
CDX99475	Canola	plastid	59.05	60.07
CDY55629	Canola	cytosol, plastid	58.71	59.52
AT4G18350.1	Thale cress	cytosol, plastid	58.71	59.52
CDY01534	Canola	cytosol, plastid	58.38	59.18
AT1G78390.1	Thale cress	cytosol, plastid	62.61	56.32
CDX98457	Canola	plastid	28.93	54.29
TraesCS2A01G012300.1	Wheat	mitochondrion, plastid	48.56	50.62
KRH45171	Soybean	plastid	10.83	38.79
TraesCS5A01G001500.2	Wheat	cytosol	34.69	37.41
TraesCS5A01G002400.1	Wheat	cytosol	34.18	35.88
TraesCS5A01G002200.1	Wheat	cytosol	31.81	35.54
TraesCS6A01G271600.1	Wheat	plastid	37.73	34.9
TraesCS4A01G004300.1	Wheat	mitochondrion	25.38	25.47

Protein Annotations

EnsemblPlants:TraesCS5A01G374000.1	EnsemblPlantsGene:TraesCS5A01G374000	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016702	GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF26	PFAM:PF03055
SEG:seg	MapMan:11.1.1.4	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:572021504..572023279

Molecular Weight (calculated)

64491.5 Da

IEP (calculated)

5.379

GRAVY (calculated)

-0.193

Length

591 amino acids

Sequence
(BLAST)

001: MQTLTASTSV SSIQRHTPRR TGRSGSLSFS ARAVSSPPRA PAPSRFVRGA DAAPAKPLIA VPKAPAVERQ EKKLNFFQRA AATALDAFEE GFVANVLERP
101: HGLSRTVDPA VQIAGNFAPV GETPPVQALP VTGRIPPFIN GVYARNGANP HFDPVAGHHL FDGDGMVHAL RIRNGVAETY ASRFTETERL QQERALGRPM
201: FPKAIGELHG HSGIARLALF YARAACGLID PSRGTGVANA GLVYFNGHLL AMSEDDIPYH VRVTDDGDLQ TVGRYDFDGQ LECPMIAHPK LDPATGELHA
301: LSYDVIKKPY LKYFYFKADG TKSADVEIPL DQPTMIHDFA ITENYVVVPD HQVVFKLQEM LRGGSPVVLD KEKTSRFGVL PKCAADASEM VWVDVPDCFC
401: FHLWNAWEEE ESDEVVVIGS CMTPADSIFN ESDECLESVL TEIRLNTRTG ESTRRPILAL SEQVNLEVGM VNSNLLGRKT RYAYLAVAEP WPKVSGFAKV
501: DLATGELTKF EYGEGRFGGE PCFVPMDPAA SRGEDDGYIL TFVHDEAAGT SELLVVNAAD MRLEATIQLP SRVPYGFHGT FVTGKELESQ A

Best Arabidopsis Sequence Match ( AT1G78390.1 )
(BLAST)

001: MTIITIISGM YIYSLLSQDA HHSQYGQNTN LVLKKPIPKP QTAAFNQEST MASTTLLPST STQFLDRTFS TSSSSSRPKL QSLSFSSTLR NKKLVVPCYV
101: SSSVNKKSSV SSSLQSPTFK PPSWKKLCND VTNLIPKTTN QNPKLNPVQR TAAMVLDAVE NAMISHERRR HPHPKTADPA VQIAGNFFPV PEKPVVHNLP
201: VTGTVPECIQ GVYVRNGANP LHKPVSGHHL FDGDGMVHAV RFDNGSVSYA CRFTETNRLV QERECGRPVF PKAIGELHGH LGIAKLMLFN TRGLFGLVDP
301: TGGLGVANAG LVYFNGHLLA MSEDDLPYHV KVTQTGDLET SGRYDFDGQL KSTMIAHPKI DPETRELFAL SYDVVSKPYL KYFRFTSDGE KSPDVEIPLD
401: QPTMIHDFAI TENFVVIPDQ QVVFRLPEMI RGGSPVVYDE KKKSRFGILN KNAKDASSIQ WIEVPDCFCF HLWNSWEEPE TDEVVVIGSC MTPPDSIFNE
501: HDETLQSVLS EIRLNLKTGE STRRPVISEQ VNLEAGMVNR NLLGRKTRYA YLALTEPWPK VSGFAKVDLS TGEIRKYIYG EGKYGGEPLF LPSGDGEEDG
601: GYIMVFVHDE EKVKSELQLI NAVNMKLEAT VTLPSRVPYG FHGTFISKED LSKQALC

Arabidopsis Description

NCED99-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.