Factsheet for Zm00001d013689_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d012529_P001
Zm00001d043095_P004

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G30100.1	Zm00001d012529_P001	AT5G17790.1	15340011
AT1G30100.1	Zm00001d043095_P004	AT5G17790.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008638_P001	Maize	cytosol	13.14	96.34
Zm00001d027690_P001	Maize	cytosol	12.31	96.1
Zm00001d023690_P001	Maize	cytosol	20.47	93.89
Zm00001d033222_P001	Maize	extracellular	93.68	93.21
EER93751	Sorghum	plastid	92.68	91.16
TraesCS5A01G374000.1	Wheat	plastid	79.87	81.22
TraesCS5D01G383500.1	Wheat	plastid	80.37	81.18
TraesCS5B01G375900.1	Wheat	plastid	79.87	80.67
Zm00001d031086_P001	Maize	plastid	74.04	78.21
Zm00001d041319_P001	Maize	plastid	77.04	76.66
HORVU5Hr1G092850.2	Barley	plastid	80.2	74.84
HORVU5Hr1G054970.1	Barley	cytosol	75.37	74.51
Zm00001d000095_P001	Maize	cytosol	20.13	73.78
HORVU5Hr1G044510.1	Barley	cytosol	72.55	72.67
Zm00001d000157_P001	Maize	cytosol	12.48	71.43
CDX82482	Canola	cytosol	46.09	69.95
Bra001552.1-P	Field mustard	cytosol	46.09	69.95
CDY57471	Canola	cytosol	45.42	68.94
Zm00001d018819_P001	Maize	plastid	65.06	68.24
Zm00001d007876_P001	Maize	plastid	64.89	67.83
PGSC0003DMT400071048	Potato	cytosol, mitochondrion	56.74	67.39
Bra012603.1-P	Field mustard	cytosol	49.25	66.97
CDX98456	Canola	cytosol	28.12	66.27
GSMUA_Achr4P22870_001	Banana	plastid	66.06	66.06
GSMUA_Achr2P12950_001	Banana	plastid	64.56	65.87
CDY39117	Canola	mitochondrion	60.23	65.46
GSMUA_Achr5P02570_001	Banana	plastid	65.72	64.75
GSMUA_Achr7P01250_001	Banana	plastid	64.73	64.51
GSMUA_Achr6P31180_001	Banana	plastid	64.06	63.85
GSMUA_Achr4P31460_001	Banana	plastid	63.23	63.02
Bra027336.1-P	Field mustard	plastid	61.9	62.31
Bra021558.1-P	Field mustard	plastid	61.56	61.87
CDX97576	Canola	plastid	61.4	61.81
CDY33218	Canola	plastid	61.4	61.71
Zm00001d023458_P001	Maize	cytosol	14.48	61.7
CDX98455	Canola	plastid	61.23	61.64
VIT_19s0093g00550.t01	Wine grape	plastid	62.23	61.41
PGSC0003DMT400039054	Potato	plastid	58.74	60.86
AT3G14440.1	Thale cress	plastid	60.4	60.6
Solyc08g016720.1.1	Tomato	plastid	58.4	60.41
AT1G30100.1	Thale cress	plastid	58.9	60.1
Bra013298.1-P	Field mustard	plastid	58.07	60.07
Bra032359.1-P	Field mustard	plastid	58.74	60.03
VIT_10s0003g03750.t01	Wine grape	plastid	60.4	60.0
CDY61838	Canola	plastid	58.57	59.76
CDY26294	Canola	plastid	58.57	59.76
CDX99475	Canola	plastid	57.57	59.55
CDX78842	Canola	plastid	57.57	59.55
CDY55629	Canola	cytosol, plastid	57.4	59.18
CDX88443	Canola	plastid	59.23	59.14
CDY01534	Canola	cytosol, plastid	57.24	59.01
CDY52448	Canola	plastid	59.07	58.97
Bra035033.1-P	Field mustard	plastid	58.9	58.8
Solyc07g056570.1.1	Tomato	plastid	59.07	58.68
AT4G18350.1	Thale cress	cytosol, plastid	56.57	58.32
Zm00001d019813_P001	Maize	plastid	18.3	58.2
Bra008358.1-P	Field mustard	plastid	56.24	57.58
CDX98457	Canola	plastid	29.62	56.51
AT1G78390.1	Thale cress	cytosol, plastid	60.23	55.1
Zm00001d042076_P001	Maize	cytosol, plastid	35.94	51.43
Zm00001d022623_P001	Maize	cytosol	29.95	48.26
Zm00001d009286_P001	Maize	plastid	18.97	45.24
Zm00001d035724_P001	Maize	plastid	44.93	42.52
Zm00001d033377_P001	Maize	plastid	19.47	41.2
KRH45171	Soybean	plastid	10.98	40.0
Zm00001d034075_P001	Maize	cytosol	2.33	38.89
Zm00001d048373_P002	Maize	cytosol, plasma membrane	32.95	36.0
Zm00001d051556_P001	Maize	plastid	36.44	34.33
Zm00001d017766_P001	Maize	plastid	36.27	34.12
Zm00001d027592_P001	Maize	mitochondrion	20.63	29.11
Zm00001d020069_P002	Maize	plastid	22.3	23.97
Zm00001d045232_P001	Maize	plastid	21.8	21.37

Protein Annotations

EnsemblPlants:Zm00001d013689_P001	EnsemblPlants:Zm00001d013689_T001	EnsemblPlantsGene:Zm00001d013689	EntrezGene:103626043	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016702	GO:GO:0046872	GO:GO:0051213
GO:GO:0055114	InterPro:Carotenoid_Oase	PANTHER:PTHR10543	PANTHER:PTHR10543:SF26	PFAM:PF03055	ProteinID:AQK64170.1
SEG:seg	UniParc:UPI0002207B31	UniProt:A0A1D6GLI1	MapMan:11.1.1.4	:	:

Description

nine-cis-epoxycarotenoid dioxygenase9 nine-cis-epoxycarotenoid dioxygenase9

Coordinates

chr5:-:17465790..17467595

Molecular Weight (calculated)

65160.7 Da

IEP (calculated)

6.883

GRAVY (calculated)

-0.157

Length

601 amino acids

Sequence
(BLAST)

001: MQGLAPPTSV SIHRHLPAGS RARASNSVRF SPRAVRSVPH ECLQAPFHAD LPAPSKKPTA IAVPRHAAAP RKSGGGGGKK QLNLFQRAAA AALDAFEEGF
101: VANVLERPRG LPSTADPAVQ IAGNFAPVGE RLPVHRLPVS GRIPPFISGV YARNGANPCF DPVAGHHLFD GDGMVHALRI RDGVAESYAC RFTETARLTQ
201: ERAVGRPVFP KAIGELHGHS GIARLALFYA RAACGLVDPS AGTGVANAGL VYFNGRLLAM SEDDLPYHVR VADDGDLETV GRYDFDGQLG CPMIAHPKLD
301: PATGELHALS YEVVRRPYLK YFYFRPDGTK SDDVEIPLAQ PTMIHDFAIT ENLVVVPDHQ VVFKLQEMLR GGSPVVLDRE KTSRFGVLPK RAADASEMAW
401: VDVPDCFCFH LWNAWEDEAT GEVVVIGSCM TPADSIFNES DVRLESVLTE IRLDARTGRS TRRAVLPPSR QVNLEVGMVN RNLLGRRTRY AYLAVAEPWP
501: KVSGFAKVDL ATGELARFEY GEGRFGGEPC FVPMDPAAAH PRGEDDGHVL AFVHDERAGT SELLVVNAAD MRLEATVRLP SRVPFGFHGT FITGAELEAQ
601: A

Best Arabidopsis Sequence Match ( AT1G78390.1 )
(BLAST)

001: MTIITIISGM YIYSLLSQDA HHSQYGQNTN LVLKKPIPKP QTAAFNQEST MASTTLLPST STQFLDRTFS TSSSSSRPKL QSLSFSSTLR NKKLVVPCYV
101: SSSVNKKSSV SSSLQSPTFK PPSWKKLCND VTNLIPKTTN QNPKLNPVQR TAAMVLDAVE NAMISHERRR HPHPKTADPA VQIAGNFFPV PEKPVVHNLP
201: VTGTVPECIQ GVYVRNGANP LHKPVSGHHL FDGDGMVHAV RFDNGSVSYA CRFTETNRLV QERECGRPVF PKAIGELHGH LGIAKLMLFN TRGLFGLVDP
301: TGGLGVANAG LVYFNGHLLA MSEDDLPYHV KVTQTGDLET SGRYDFDGQL KSTMIAHPKI DPETRELFAL SYDVVSKPYL KYFRFTSDGE KSPDVEIPLD
401: QPTMIHDFAI TENFVVIPDQ QVVFRLPEMI RGGSPVVYDE KKKSRFGILN KNAKDASSIQ WIEVPDCFCF HLWNSWEEPE TDEVVVIGSC MTPPDSIFNE
501: HDETLQSVLS EIRLNLKTGE STRRPVISEQ VNLEAGMVNR NLLGRKTRYA YLALTEPWPK VSGFAKVDLS TGEIRKYIYG EGKYGGEPLF LPSGDGEEDG
601: GYIMVFVHDE EKVKSELQLI NAVNMKLEAT VTLPSRVPYG FHGTFISKED LSKQALC

Arabidopsis Description

NCED99-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M9F5]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.